DreINT0061765 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28895438-28895755:-
Coord C1 exon
chr5:28895611-28895755
Coord A exon
chr5:28895516-28895610
Coord C2 exon
chr5:28895438-28895515
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
TCTTTGTCTCTCTGGAACAGCAC
3' ss Score
8.26
Exon sequences
Seq C1 exon
AGATGTGTCCCGAGGCTATGAGGACATTCCTGTGCCCTGTGTGAATGGGGTGGACCACGAGCCCTGCCCCAGCAACTTCAAATACATTCCGGAGAACTGCTTTACCTCCCAAGTAAATATAGATGAGAACATAAAGCACTTACAG
Seq A exon
GTACGAGATTCAGTGTTGTAAAGTCAAAAGCCACAACGAGGTTAATACATTTACTACAGCTTGATGAAATGCTCATCTTTGTCTCTCTGGAACAG
Seq C2 exon
CACTGCAGTTGTAAAGATGACTGTGCGTCTAGCAGCTGTATCTGTGGCCAGCTCAGCATGCACTGCTGGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTGCCCTGTGTGAATG
R:
TGGCCACAGATACAGCTGCTA
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]