HsaINT0054751 @ hg19
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:24650]
Coordinates
chr9:140707838-140708960:+
Coord C1 exon
chr9:140707838-140707982
Coord A exon
chr9:140707983-140708882
Coord C2 exon
chr9:140708883-140708960
Length
900 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCGGCGCCTCTCTTCTCAGTAC
3' ss Score
8.14
Exon sequences
Seq C1 exon
GGACATCGCTCGAGGCTACGAGCGCATCCCCATCCCCTGTGTCAACGCCGTGGACAGCGAGCCATGCCCCAGCAACTACAAGTACGTCTCTCAGAACTGCGTGACGTCCCCCATGAACATCGACAGAAATATCACTCATCTGCAG
Seq A exon
GTGAGTGACGGCAGATGAAGGGCTGACTCAGGCCAGGACATGGGACAGGCAGAAGCTTCTTGAGCCTGGGGTCCTGGGTTCTCACCACTCAGAGCAGGAGGGCTTATGGGGGGCTTCCCAGGAAGACCTCATTCTCTTTGTAGTTGCCTCCCGTGAAAGAGCTGGAAGGCAGATAAAGGTTCTGTCAGGCCCAGCCCTGGGCCCTCTCATTGCTCTTCCAAGGCTTCTTACCGACCCAAAGCAGTGGCAGGCATCTTTGTGCCTTTTTTGTAACCTCACACTCAGGGGCCCCGGTGTGGCTTCGTGCTGGGGGCACAGGCGAGAGGAGCCCTTGCGAGGCCTGCAGGACGACCTGGATCCCTGCACCTCCCAGCCCCCGGAGAGATGGGTCCAGCACATGCCAGCTTTCCCAGCCTCCGAGTGCATGCAGCCTGGTGCCCTCACTGCTTGCGCCTTCTCGAGCACTTTCCTTGTGGCTCTGCTTGTGGGCAGCTCCCTCCTCTTCCCAGGCCGGGCACTGCCCAGGCCCCCCCCCCCCCCCGCCCCCCGCCCCACAAGGTGTGTCAGGCTCTGTGTTCTTGCCTTTCCCATCGAGCATCTGGCCACAAATGCAGCCGCCGCCCAGCCCTTCACCCACCCCACGTCACCCACTGCCGCGTCGCTGCCCTGCCTGCCCCCTGTCCCTCTGTCAGGGTCCTCAGCCAGAGCTCCCTCCCACAGGCACTCGACATGTTTCTGCCTGCACAGCCTTCTCCCTAAGAGGCCACACACTCACGTGGTGCCTTTGAGAAGCACTTACCAGAATCAGGGTTAACAGAACTGGAAGACGTAGTTGTGACTGGGAGGGGAAATGGAAGGCCTGTGCCTGCACGTCTGACCCCCCGGCGCCTCTCTTCTCAG
Seq C2 exon
TACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGCGGCCAGCTCAGCATGCGCTGCTGGTACGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090-EHMT1:NM_024757:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGCTCGAGGCTACGA
R:
CTTGTCGTACCAGCAGCGC
Band lengths:
222-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)