BtaINT0054903 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105436398-105436953:-
Coord C1 exon
chr11:105436809-105436953
Coord A exon
chr11:105436476-105436808
Coord C2 exon
chr11:105436398-105436475
Length
333 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CTGACACACTCTCCCCGCAGTAC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGACATTGCTCGGGGCTACGAGCGGATCCCCATCCCCTGCGTCAATGGTGTGGACGGCGAGCCGTGCCCCAGCAACTACAAGTACGTGTCTCAGAACTGTGTGACGTCCCCCATGAACATCGATAGGAACATCACCCACCTGCAG
Seq A exon
GTCAGCAGGGGGCCCTGGTCCGGGCAGTTGCTGGGTGGTGGGAGGGGTTGCTGGGTGGCAGGAGGCTCGGGCCCAGGCTCGGGCTGCCATTGGCTCTGCTGGCTCGGCTGTGGCCACTCCCCCCAGCGTTGGCCCCGCTTCCCTGCGCTCTTGGGCCCGTGTGCCCAGGCCCCCAGCCCTCCCCCTCTCCTGCAAGCCCCATGTGGGGGCCCTGGTGTCCTCTCCACCTCCCTTGGGGGAGGCTGCAGGCCCTGGGTCCTGAGGACGGTCCCTGGGGCTGGGAACAGCCTGGGGCTGCGGGATGGGGCTCCGTCTGACACACTCTCCCCGCAG
Seq C2 exon
TACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGTGGCCAGCTCAGCATGCGCTGCTGGTACGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTGCTCGGGGCTACG
R:
CTTGTCGTACCAGCAGCGC
Band lengths:
222-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development