RnoINT0053553 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1979348-1980243:-
Coord C1 exon
chr3:1980099-1980243
Coord A exon
chr3:1979426-1980098
Coord C2 exon
chr3:1979348-1979425
Length
673 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GCTGTGCACTGTGTTTTCAGTAC
3' ss Score
6.7
Exon sequences
Seq C1 exon
AGACATTGCCCGAGGATATGAGCGCATTCCCATTCCCTGTGTCAATGCTGTGGATAGTGAGTTATGTCCCACCAACTACAAGTACGTCTCCCAGAACTGCGTGACGTCCCCAATGAACATCGACAGGAACATAACTCATTTGCAG
Seq A exon
GTTGGTGGGAAGAAGGGGTGGAGGGTCTCTAGAACCGGGTCCTAGGACTTAGCACCATTCTGCAAGAAGGCCTGAGGAAGTTTCCTAGGAGATCCTGTTCTCTCTGTACCTGTCTTGAAGGAAAGAGGTGGAAAAAAGACAAAAATCTCAACTTCTCTGTTAGGCAGGACCCCAATTTTCCTAGCACACTTTGAAAACCTACTGAAGGCCCTAGATGTCCCTGATGAATGGTTGCTCAGAGCCTCAGTACCGCCTGGTCCTTAAGTCATGAACAAGAGGTTCTTGCTAGGCTAAGACATAGGCACTGCATGCCCCCCAGCCCCAGCAGCCATAGCCCAGCACGCAGCTTTCCCATCTCTTTGACTTTTTCATTTGAAAGACTTTTCCTTACCATTGTGCTTAAGGGAGTCTCCTGATTCTCACAAAATAAGCTGTGTAGATGTTAGTTTGGTTGTGAGATTCCATATTCTCGTCTTTACTGAGAGGTATCTGGCCTTCAGTGCAACAGGCTTTTTAGTTCCCCGCAGGCTACACATGTCTGAACTCCTACCTGCGCCCTGCCAACATGGTGCATTTTCCTCAGGGTGTCTCAAGCATTTGGTGATGATTGCAAGGGTAGGGTTGGGCGCAGGAATGTGACACCTGTGTGACATGCTGTGCACTGTGTTTTCAG
Seq C2 exon
TACTGCGTTTGTGTAGACGACTGCTCCTCTAGCACCTGCATGTGTGGCCAGCTGAGCATGCGCTGCTGGTATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTGCCCGAGGATATGAGC
R:
CTTGTCATACCAGCAGCGCAT
Band lengths:
222-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]