HsaINT1012292 @ hg38
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137813386-137814508:+
Coord C1 exon
chr9:137813386-137813530
Coord A exon
chr9:137813531-137814430
Coord C2 exon
chr9:137814431-137814508
Length
900 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCGGCGCCTCTCTTCTCAGTAC
3' ss Score
8.14
Exon sequences
Seq C1 exon
GGACATCGCTCGAGGCTACGAGCGCATCCCCATCCCCTGTGTCAACGCCGTGGACAGCGAGCCATGCCCCAGCAACTACAAGTACGTCTCTCAGAACTGCGTGACGTCCCCCATGAACATCGACAGAAATATCACTCATCTGCAG
Seq A exon
GTGAGTGACGGCAGATGAAGGGCTGACTCAGGCCAGGACATGGGACAGGCAGAAGCTTCTTGAGCCTGGGGTCCTGGGTTCTCACCACTCAGAGCAGGAGGGCTTATGGGGGGCTTCCCAGGAAGACCTCATTCTCTTTGTAGTTGCCTCCCGTGAAAGAGCTGGAAGGCAGATAAAGGTTCTGTCAGGCCCAGCCCTGGGCCCTCTCATTGCTCTTCCAAGGCTTCTTACCGACCCAAAGCAGTGGCAGGCATCTTTGTGCCTTTTTTGTAACCTCACACTCAGGGGCCCCGGTGTGGCTTCGTGCTGGGGGCACAGGCGAGAGGAGCCCTTGCGAGGCCTGCAGGACGACCTGGATCCCTGCACCTCCCAGCCCCCGGAGAGATGGGTCCAGCACATGCCAGCTTTCCCAGCCTCCGAGTGCATGCAGCCTGGTGCCCTCACTGCTTGCGCCTTCTCGAGCACTTTCCTTGTGGCTCTGCTTGTGGGCAGCTCCCTCCTCTTCCCAGGCCGGGCACTGCCCAGGCCCCCCCCCCCCCCCGCCCCCCGCCCCACAAGGTGTGTCAGGCTCTGTGTTCTTGCCTTTCCCATCGAGCATCTGGCCACAAATGCAGCCGCCGCCCAGCCCTTCACCCACCCCACGTCACCCACTGCCGCGTCGCTGCCCTGCCTGCCCCCTGTCCCTCTGTCAGGGTCCTCAGCCAGAGCTCCCTCCCACAGGCACTCGACATGTTTCTGCCTGCACAGCCTTCTCCCTAAGAGGCCACACACTCACGTGGTGCCTTTGAGAAGCACTTACCAGAATCAGGGTTAACAGAACTGGAAGACGTAGTTGTGACTGGGAGGGGAAATGGAAGGCCTGTGCCTGCACGTCTGACCCCCCGGCGCCTCTCTTCTCAG
Seq C2 exon
TACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGCGGCCAGCTCAGCATGCGCTGCTGGTACGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090:ENST00000460843:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=PU(44.3=95.9)
A:
NA
C2:
PF0503311=Pre-SET=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGCTCGAGGCTACGA
R:
CTTGTCGTACCAGCAGCGC
Band lengths:
222-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains