BtaINT0024997 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27282871-27283233:+
Coord C1 exon
chr23:27282871-27282985
Coord A exon
chr23:27282986-27283131
Coord C2 exon
chr23:27283132-27283233
Length
146 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTCTCTGTCTCTGTGTCAGGAG
3' ss Score
8.74
Exon sequences
Seq C1 exon
AGTGGTTCCAGCGGCCGCCGCAAAGCCAAGAAGAAATGGCGGAAGGACAGCCCATGGGTGAAGCCATCACGGAAACGGCGGAAACGAGAGCCTCCGAGGGCCAAGGAGCCACGAG
Seq A exon
GTGAGGAGGCTCCTCTGCTTTGGGGTCCCCTCCTCCAGCCCCCTCCCAGCCCCCAGAGAGCGTGCATGCACACCCACGCTCCGCATGCACCCCCGCGTCCAGGCACCTGTGAGCTCGCACTCTCACTCTCTCTGTCTCTGTGTCAG
Seq C2 exon
GAGTGAATGGTGTGGGCTCCTCAGGCCCCAGTGAGTACATGGAGGTCCCTCTGGGGTCTCTGGAGCTGCCCAGCGAGGGGACCCTCTCTCCCAACCACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(15.4=100)
A:
NA
C2:
PF0334410=Daxx=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGCAAAGCCAAGAAGAAA
R:
CAGCGTGGTTGGGAGAGAGG
Band lengths:
202-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]