MmuINT0055991 @ mm9
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:35042287-35042656:+
Coord C1 exon
chr17:35042287-35042401
Coord A exon
chr17:35042402-35042554
Coord C2 exon
chr17:35042555-35042656
Length
153 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTCTCTGTCTCTGTGTCAGGAG
3' ss Score
8.74
Exon sequences
Seq C1 exon
AGCGGTTCTAGTGGCCGGCGCAAGGCCAAGAAGAAATGGCGGAAAGACAGCCCGTGGGTGAAGCCATCTAGAAAACGGCGGAAACGAGAGCCTCCGAGGGCCAAGGAGCCAAGAG
Seq A exon
GTAAGACGGCTCCTCTGCTCTCAGGTCCCCTCCTCCGGCCCCAGAGAGCAGCACACACTCGGATGCTCGTGCATGTTCACTGTGTAGACCGCATGTGCGCACGCGCCCAGGACCTGTGAGCCCCCACTCTCACTCTCTCTGTCTCTGTGTCAG
Seq C2 exon
GAGTGAATGGTGTGGGTTCCTCAGGGCCCAGTGAGTACATGGAGGTTCCTCTGGGGTCCCTGGAGCTGCCCAGCGAGGGGACCCTCTCCCCCAACCACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-Ehmt2:NM_145830:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF041477=Nop14=FE(27.7=100),PF0334410=Daxx=FE(18.8=100)
A:
NA
C2:
PF041477=Nop14=PD(1.5=5.7),PF0334410=Daxx=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGTTCTAGTGGCCGG
R:
GTGGTTGGGGGAGAGGGTC
Band lengths:
213-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: