GgaINT0126643 @ galGal4
Intron Retention
Gene
ENSGALG00000008472 | EHMT1
Description
histone-lysine N-methyltransferase, H3 lysine-9 specific 5 [Source:RefSeq peptide;Acc:NP_001012550]
Coordinates
chr17:2047760-2049626:+
Coord C1 exon
chr17:2047760-2047880
Coord A exon
chr17:2047881-2049494
Coord C2 exon
chr17:2049495-2049626
Length
1614 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
ATACGTGTGTTTCAATCTAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
AGCTCGGAGTCCAGCATCAAGAAGAAGCTGTTGAAGAGGAAAGGAAAGACGGACAGCCCATGGCTGAAACCCACCCGCAAGAGGAGACGGAGGAATAAAAAGAAACAAGCCAATGTGCTAG
Seq A exon
GTAACTAATTGAGTTTTGTTCTTTAACTGCACAGAAAGTGGTCTGCTAGGTAGGGGTAAGGACCTCCGGCCCATAAGGCAGCGGTTGTCTGCAGAGCTCTTTCTTCCTTTTCAAGAGAAGGCTTACCTTTATGGTTAACCAGGGCCTGAACTTGCATCTCACTTACAGGTTCATGTCTGCACTTTAACAGCAGAGTAAACATGACGCAACTTTATCCTGGGCATGCTGAAGTAATGATTTTTGTTCATGAGCTCTCTTTGTTTTAGAACGTCCAAAGAAGACTTCATGGGCTGATGATGTAAACTATGAACTTAAGGAGATTGGGTAGATGGAGAAGAGAAAGGAATAACCATCCCAGAGTGATGCTTGATTGCTTCTGTGTGGGTGTTAGTCCTGCTGAATGCTATGTGCTGGCTGTCCTTGTTACTCCAAAGCACTGCAGCCCATCTCCAGGCCTGAGTTCAGGTGGCTGTTCTAGTCTGAGTGAAGTTACACAGCACTCAGAGGTTGCAGTTCACTGTGTCCTCAGAAAGCTGTGGGATGAGGATGGAGGAGGTGCAGGCTGGATCTGATTCCTCATCTTCAGGAAAAGCAACAGGATGGGTTTAAAATAAAAGAGTTGGTAGTCTCTGAAGCCTTCTCTTTATTAAGGCTTCACACATCCATTGCCATCAAAGAGTTTATTCTGTTTGCTAATGCTTTACGAACAGGCCGTTTTTTATCAGCAGTTGTTGCTGCCTCTTTTCTCAATGGCCACGTTGCAGCCCCTGAGCTGCTCTCAGCGTCTGTCACTCATCTCATTTGCTCCTGTTCCTCCCAGGGCAAACCCTTCCTAAAAGGAAACGGGGGCCATTGATCCCTTTCAGAGCAAACAACTAATTCTTCATTTGAGATGCAGGCTGTTTTTCTGCCCCTTAAATAAAGGTGGCAGCCAGTCTTTCAGGCTAACACAAGTCTCTTGGCCAAGCCTGAGTGGGAGAAGCAAACCAGGATTGAGAGTCGAAGCCAAGGGAATGTGAAGAGATGACAATTCCCACGAAGGCTCCGAGGGATCCCCCATGCAATCCCTTCTTAGCAGCAGCTTTGTTCACTCAGAGCCAGAACTTGGCTTTTATGTTTTCCCCTCCCATTCAGCTGAATGTCACCTGTCTCGTCCTCTCCAGGACGTGCGTTAGCAGCCGGTTTGCTCTGCCTGGCCGGAGTGTACCTGGAGCCCTTTGCAGCAGGTTGGAGACGGGGGAATGCGCCAAGCCCTGGTTTCAGCCCTTCCTTATGCCATTTGAGCTTCTGCTGCTAATGCAGTGCAGCAGCAGGCAGATGTGCCTTTCAGATGCAGAACTTATTTGTCTCATTTATCCCCCCCCCCTTTTTTTTTTGTTTCCTACCTATGTGGAAGTGAAAAATCTGTTGGATCAGACAGGGGTGGAAATAAGAGATGGGAGATCAATTGTGCCACATCTGCCCAGATGCTACATTTCCATCATTCTGTGTGCATCTGTACTTACAGGCTCTCTGAGGAGCCTGCATGCAGCCATCTTGGTTAAATATGGCCTTTACACATGCACGCACTTTTATTTTTTTCAGCTATGTAAATATACGTGTGTTTCAATCTAG
Seq C2 exon
GTGCTGAAGCCTATAAATCATCGTTGGGAGGCAGAGAGGGCTCTGCCCAGGATAACAGCATGGAGTACATGGAGGTGTCTCTGGATTCCTTGGATCTGCGGGTGAAGGGAATCCTCTCCTCGCAGGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCGGAGTCCAGCATCAAG
R:
CTGCGAGGAGAGGATTCCCTT
Band lengths:
246-1860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]