DreINT0061795 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14566387-14566752:-
Coord C1 exon
chr21:14566635-14566752
Coord A exon
chr21:14566531-14566634
Coord C2 exon
chr21:14566387-14566530
Length
104 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTATGTCTGTCCCATCCTAGCTC
3' ss Score
7.67
Exon sequences
Seq C1 exon
AGTTCAGAATCCAGTTTGAAAAAGAAATGGAAAAAGAAAGCCAAAGGAGATCATGCCTGGCTCCGACCGTCAAGGAAACGCAAGAGGAAATGGAAAGCAAAAACGGACAAGGTTTCTG
Seq A exon
GTGAGAGTTTAAATGCATGTTTTCCTGAAATATCAGGTGTAGGGCAGCACTTTAAATTTTAATTTGTTTCATTTACAATTCTCTTTATGTCTGTCCCATCCTAG
Seq C2 exon
CTCCAGTAACGGAGATCCAGTCTCGGCCAGAAAGCCAGAGCGCCCCATCAGTCCCTACTGCTCACAGAAAGGAGTATAAAGAAGTCCCTCTAGACTCTCTCAATCTAGCAGCACAGGAAGCCTTATTGACATCTCAAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGAATCCAGTTTGAAAAAGA
R:
AAGGCTTCCTGTGCTGCTAGA
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]