HsaINT0054743 @ hg38
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137754171-137758011:+
Coord C1 exon
chr9:137754171-137754291
Coord A exon
chr9:137754292-137757879
Coord C2 exon
chr9:137757880-137758011
Length
3588 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
3' ss Seq
TGTGTGCCTTTCATACCTAGGTT
3' ss Score
10.24
Exon sequences
Seq C1 exon
AGTTCGGAATCCAGCATTAAGAAGAAATTTCTCAAGAGGAAAGGAAAGACCGACAGTCCCTGGATCAAGCCAGCCAGGAAAAGGAGGCGGAGAAGTAGAAAGAAGCCCAGCGGTGCCCTCG
Seq A exon
GTAAATGCCGTGGGGGTGTGGGCCATCACGGGGACTGCCTGGGAGGGGATGGTGCCAGGAGGCCCACCTGGGGTTGGGGTGCGTAGGATTTCATTAGAAAAGAGGGCATCACTGTTTAAAAAAAATGTTTGAAATGACTTTGTTAGAGAAACTCAAGTGATTCTAAAGTAGTTTCCTTCTGGCCAATGTAGTGGACGTTGACTTCACTGTTGTTGTTTTTAATTTAATTTTTTTTTTTTGAGACAGGATCTGGTTCTGTTACCCAGGCTGGAGCGCAGTGGCACGATCTCAGCTCACTGCAGCTTCCACCTTCTGGGCTCAGGCGATCATCCTACCTCATCTCCCCAAGAAGCTGGGACTATAGGCGTGTGCCATCATGCCCAGCTTATTTTTTTGTGTTTTTTTGGTAGAGATGGGGTTTTGCTATGTTGGCCAGGCTGGTCTCGAACTCCTGAGCTCAAGCGATCTGCCCGTTTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCCCAACTTCATTGTTGAATGTTGAACCGAGGTGAATCATTTGCTGCCCGCATGGGTGACTGGAACCTGTGGCCTGCATGGGCAGCTCCCACGTTGTGTGCAGGAAGCGGCCCCTCAGTGAGGCACCTGTGCCTCGGTCAGAGTCCCCTGTTCCAGAGGAACTTTGTGAATCACAACGTGAATGTAGGAAGGAAATCTCCTCAAACCCAGAAGGGATGCAGCAGGTTTAGGGTGCCAAGGGCCGTTTTTGTTTCCAGCTTAACCGAGGTGCACCTGGCATCCAATAAAATGCACAGAAATAAATTACACAATTTGACAAGTTTTAACATGCTTATGACCTTGAATCCATCACCACAGTCAGATGATCAGTGCCATGAGCTCCTCTGTCACCCCGGGTCCCTCCTGCCCTTTGATAACCTGGCCCCTTCCCTGCCTCCCTTCCCTGCTCCCAGGCAGCCCCTGGTCTGCTCTGTTTCCATGTATTGGTTAGTGTTCTGTAGAATTTTATATAGATGGAACTGTGTGGTTGTTTTTCATCTGGCTTCTCTGAGTATAATTGTTTTGAGTTGCCAGGCTGTCGAATGGCCAGGAGTTTGTTTCTGTCCATTGCTGAGAAGTGTCCCATTGTGTGGCTGCCCCACAGTCTTATCTGTCCATTCATCCGTCCATGGGCTTTGGGCTCTTTCCAGCCTTGGCTGCTAGAAATTAAGTGGCCGTGAACATTTGTGTGCAAATCTTTTTTGAACAGGTGCTTCCCTAGATCTTGGTTAGGTATCTGGGAGTGGAATGGCTGAGTAGAGTGGCGTGTGTTCAGCTCTTCAGGAAGCTGCCAAGCTGTTTTCCAAGCACTCGTCCTGTTTTAGGTCCAGACAACACACAAGCATTCCAGTTCCCCTCTGTCCACGCCAGCACTTGTTAGGGTTAGTCTTTTTAATTCCAGTGGATCTGTGGGTGTGCAGTGGTGTTTTACTGTAGTTTCAATGCTGTTACCTAATGAGTAATGAGATTGTACATTTTAGCCTTCATTTAGTTTTTTTGAAACGTGTCTGTTCACATCTTTTGCTCACTTTTAAAATCTGGTTGTTTTTCTTCTCATTGGGTTAAAAGAGTTTTTAACATATTCTGGAGACAAGTCTTTTATCAGGTGGATGTTTTGCATGTATTTGTACCTAGTCTCTGACCTGCCTTTTCATTTTCCTAATGCTGTATTTAGAAGAGCAAACGTTTTTAAGGTTTTCTTGAAGTCCAAGTTACGAGTTATTTTACTTGGGGGGTTCATGCTTTTGTGCTCTAAGAAATCTTTGACAGACCCAGGTCACAGAGGTTTTGTCCCTTGTTTTCTTCTTGGCATCTGCAGGCTCCGCGCTTGCCTGTCGGTTCATTTTGCACTGATGTTTGAGTGAGCTGTGGCGCAGGCCCCTTCTTGGCAGTGGGTGTGCAGCTGCCATAGGCACTGCTGCTTGAGTTGATTTTTCTCCACCTGTTGACATTCAGTGTGTGGGCTGTTCCTGGACATTCTGGTCTGTTTCATTTATTTATTTGTTTATCCTTATACCAGTGTCACCGAGTGGCAGCACTTTGTTCTTATTCACAGTGATTTTGGCTAATCTAGATTCCCCAATGTAGAGTACCTCTGTTAACTGGATGTTGGGGAGGCGTCATCCCCTGAAAAGAGAGGGTTGCGGGAGACCTGGGGCGTGAGGCAGTCACCATGGAGGCTCCTGGCGTTTGAGGGTGGAGGACGTGTGAGCCCCCCGGGAGCTGCATGTGGTGCTTCAGTTACGTTTCTCTTCACCTCAGTTTATTGATTCAGATCATAACACCAGATGTGGCTTTTACTGTTGGCCAACAAAAGCATTTTAGAGCCAAGACTAAAAGTTGTTTTTGGGGTAGAGATTTCATCTTTGTCATCTTGGCTGTAATGTGCAAAATGTGTGCTTTTAAATATTCACAGAGGAGTTTGAATTTTATTTCTTTATGAATTTTTTATTTAAATCTTCTTTTCGTTTAAAACTATACAAAGTGTACTCCTGTTCTTCAAGTTGATGATGGTGATTTCTCAAAGGTGGTTGACTTTTCCTGTCTGTCTAAGATCTAGGTGGAGCATGTGGCTTGAATGAAAAGACTGGTTACCATACCTCTCTGTGCTAGTGTTCATTTATTTCCAGTCATTGAAATAAGATTGGTGACTAGTCCCTAGAAGCTTGGCTGTGAAATGTGACCATCTGCCCTTGGCCGGAGTTAGATATTACCTGGTACAGGTACACACTTTCATAGGCCTCCTCAGTGAATGCCCTTGTGATTACAAACACCCAATTTTATATATCTTTCTCCGGCCCTCCTGGGAAGTGTGGACAGGCTGGCCTGGCCACCACTCGTGTGTCCTTGAGGGCAGGGAAGCCCACAGAAGTGTTTGCACCCCCCACTGCCCTCGCTGCCAGCCAGGGGACACCGGTCCTTCTCACAGCACCCTGCTCCCTGGCACCTTCTGTGGGTGTCGTGAGCCTCCCGTGTTTACTGGAGTCGACACTGATCCTTTCCGGGAGCCTCCCTGGATTTCAGCCAGGACGCCCGGGAGGTCATTGCTTTCTCTCTGACACAGATTTGCCTGCAACATGGCACCTTGGGCCATCTCTTTAGCTACTTTACATCTGATCTTTCAAATCTGCAAGTTAGATTTTTCTGTTTTATTTAAAAATAATCTACAACATATGACTACCATGTTTTTATCTGTTTCTTTGATCATTTGATAGCTTTTATGTAGTTGGTGTAGTTACAGAGAAAGATGTGCTGACATGTTGGTGCCTTTGTTTTTGTCTATACAGCTTCTCTCCTCCCCCATGAATATTATGTCTAAAAGGGGGAATTAGCAAAATAATATGCGGGAGAGAAAATGATAGTGAAACTGGAATGGTCTAAACCATAGTGGGTTTCAACTTGTGGTTTTGAATGGATTAATTAGAAGTAGTCCATTTCCTGGGGCCCCAGCCTTGCTGCCCTGTGCGTCTGGGTGGGTGCGGCCGCCTGGGTGCGTGGTGTCTGATGTGTGTGCCTTTCATACCTAG
Seq C2 exon
GTTCTGAGTCGTATAAGTCATCTGCAGGAAGCGCTGAGCAGACGGCACCAGGAGACAGCACAGGGTACATGGAAGTTTCTCTGGACTCCCTGGATCTCCGAGTCAAAGGAATTCTGTCTTCACAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090:ENST00000460843:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.663
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development