MmuINT0055989 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24852665-24856726:-
Coord C1 exon
chr2:24856606-24856726
Coord A exon
chr2:24852803-24856605
Coord C2 exon
chr2:24852665-24852802
Length
3803 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
AATGTGCATTCTGTGTATAGGTT
3' ss Score
8.45
Exon sequences
Seq C1 exon
AGTTCTGAATCCAGTATCAAGAAGAAATTTCTCAAGAGGAGAGGGAAGACTGACAGCCCCTGGATCAAACCTGCTCGGAAAAGGAGGCGGAGAAGTAGAAAGAAGCCGAGCAGCATGCTTG
Seq A exon
GTGAGCACAGTGGCTGGGGTATATCAGCAGGAAGCTGGCTGGGGCTGGTTTGTGTGAAGCATTTCACTTGAAAAGAGGGTCTCCTATAAAAAGCTGAAAATGACTTTTTTAGAGACACGTAAGTGATCCTCCGGTAGGTTGCTTTGTTACCAAACCTAGGTGATTCTGGCTTCATTATTATTATTATTATCCAAGCAGGAAGCTAGCTTGGATAGTTTGTCCCCTGCACAGGAGTACTGTCTTTTTTCCTGGGTAGACATGTTCCATACCATGTGGAAGTAGGAAGTCTGTGGTCCCTGGCGGCCTCTGTGGTCTGAGGAGGTTTGTGCTTCATCCACAGGCCTTAGTAATGGTTTGTTAAGGCGAGTTCAGGAAGATCAGAGAGACAGAGAGTTAGTGCCAAGTTTATGGTATAGCTCTGTTGAGTTGTTCCTGGCACACAGTGGAATGTTTACAAGTCATAGTATGGAACTCTCTCAGCATTGTATCAGGATCAGGCCAGCATTGGACTCACTCTGTAGAAGTCCCTGCTGCCCCGCTGCCTTGGCGAACCCTCCCTCATCCCCTGGAACCACCTTCCGGTTCCCAGGCAGCCCTTGATGCTCTGTGCTCCTGATAGGCTAGTAGTTACAGATTTTTGTGTGAGCGGAATCGCTCAGTATGAACACCTTTTGTTCCACTCTGGCTCCTTTGAGGTAATCATTTGAGCACCTTCCTGTTGTATATGTCCACAGAATTTTGTTTTGTTCCCTTCTGAGAAGTGTACCGATGCGTGGGATGCTATTGCTTGTTAGTGATTTCTTGAGGGTGGACCCTGGTCTCGGCTAGGTTACTGCACAGGTGTTTCTCATCTCTGGCTTACTAGCTCAGTCATAGACAGTGTGCTCAGGTCTTTGGGAAACTACTAAACTCTTCTGAACTATGCGTCTCATTGGACATCACCTACCACACAGTACCTGGGCTGTGGACTCCTTCTGTCCTTGCCACTGCTTGACGGGGTCTGTGTTTAAAGCTTCAGTGCTTCTAGTGGGTGTGCAGTGGTGCTCTGTGTTCTTTCCAGACTGATGGTGAGATGGAGCATCACACCTTGTGTGTGTTTTCTTTTCTGAAGTGTGCATTTGTGTCTTTCATTCCCTTCTCACTGAGTTGCAAGTGTTCTTTAAATGTTCTAGGTAGAATTTTAGTAAATGTTTTGTACCTAATCTGTGGATTGCTTTTCTATTTTCCTAATAGTATATTTAGATAAGAACAGCTAGTAAAATTTTTTAGTGAAGTCAAATTTATGAATTGTTTTCTTTTATGGTTCTTGCTTTTTTGCTCTTTGAGTAGACCAGGTGAGCAGTGTGAAGTCCACATTGTCTTCTCATGCTTTCAGCGTTTACACAGGTCCTTAGCGCACTGAGTCAGCATTTGCATGTGTGAGGAAGCGTGTGTCGGCCCCTTCTGTAGGGAAGCAGTCCATCAGGGGATCCAAAAAAGCTCACTACTTTTTTTTTTTTTTTTAAAGATTTATTTAGTTTTATTCATGTGTATGAGTGTTTGCCTGTATATGTATATGTACACCATATATCAGGAATTCGGGTCACAGATGAGTGAGCTGCTCTGTGAGGTAGCAGTAAATTAACCACTGAGCTGTCTCTTCAGCCCCCAAATCAAATTCTGACTTTATTTATTTCTTTGGAATTTTTGTCATCAGTGGTGTGTAGGTGGTGCTTCTGAGTCTTCTAATCTGCTTCATTTCCTTGTTTGCTTATTATCTTTATGCTGCACAGACAGCTCTGCCCAGTTGTTTGTTTAGCTTCTTCTGACAGAAAAGAAGGTTTGTGGGCTAGATCGTATGAGACAGCCATGTGACATTGGAAGGACTGTATAGACTTCTGGGCTTTGTCGATCCAGGGCTTGTGTGCCTTCCTCAGTACCTCATATGCCTGTTCGTTTGTACTACCATTTATTCTCATCATTGGCTGCTCTTTGAGATCAGAAAATCCACGAGGTTTTACTGTTGGCTTTGACAGATGTCTAGTACTAAAGGATACTTTGAAGGTAGAGATTGCACATTTAGATATTTACTGAAAATAAGGAATTTTATTGTTTTATGTAAAATGTTTAAAAATTTAAGTCTATTTTTGTTTTTGAAATTTCTTTCTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTTCACTGTAGCTGTCTTCAGACACTCCAGTAGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATTTCACCAGCCCGTTTTTGAAATTTCTTGTCTAAGATCTTGGTACAGAATACAGTTTGAATTAAAATATATTGGTACCATACCTCTGTATTAATGATTCATCTATTTCTGGTCATTTACATAATATTACATATTGATATTTAGATTCAATGTTAGTATGTAACATAAACACACTTTTTAGGGTTCCACATGAAATTTCTTTATAATTGGAAATGCCATATTTCATATAGGTGTCTTGGGCCTTCTCTCGTCTCCAAGGATGAGAGGCTGCGTAAGTCTTTGTACCATGATCTATAGAATTAGTTTTGGAATTAGGCCTGTTTGGATCTATCCATCTTGACATGTTTAGATTTCATTGCGCTTTAGTGAGTAGTATGTGTAGCTCTACGGTTAAGTTGTTTCATCATCTTAGTGTTTCATCATCTTCAAACTTGCAAATTAAAATTTTCTGTTATATTTTAAGCTTTAAAACAATTTATAGAAATTTATCATTTTTTTTGAGATATGGTCTCACTATGCATCTATCCTTTGGAGAGCGAGCTGCCATCGCCTTCCCAAGTGCTGGGATTAAAGACATGTACTGCCAGGCTGGGCTCATTTATCACATGTTTATTTATTTTCTTGATTATTTTACCAGTTTTTATTTAGCACATCTGGATATAAGTTGTATTAATTGGAGCTGAAGAGATGACTGAGCAGTTAAGAGCACTGGATACTCTTTTAAAGGACCAGAGTTTAATTCTCAGTACCCGTATGTTGTCTCACAGCTGCCCATAACTTCAGTCCCAGGGGATCTGCTTACCTCTTCTGACCTCAGAAGGCATCAGATGTACATGTGGGACGTATACATACATAAAGGCCAAACACTGAGAAGCATAAAATCATTAAATATATCTAAAATTTTTTTAACTTGAAAAAAAGAATGTAATTTGTGGATGGTTGGTTTTTGGGTGGAGGTAGGGGAAATCTTACTCTGTAGCCCAGGGTAGCTTAGAATGCGTGGCTAACCCCATGCTGGCCTTGTTCTTCTAAGTGCTATTAGAAACACGAGGCACAATACTGGTTTCTTTGATTTTTCTGGTTAGCCTCTTTCTTGTGAAACTGGGTATATACATGGGGAATTAATGTATGGTAATAGAAACCGAAGTGGCCTAGGTAGTGTTATTTAAATTCATCAGAGTTCATTAGAATTAATTCTTTTTCTGAGAACTGGCCTCTAAATTAGAATGTTTGTTGTTGTGTTTTATTTTGGGGGTTTTAAAGCAGAAGTATTTTTATTGTGTGGGTGTTTCTTATGTGTAGGTTAGAGGACAGCTTATGGGAGTAGATCTCTCTCGTGTGGGTTCTATGGACTGAACTCAGGTTGTTGGATTTGGCTACAAGCACTGTTACTTCTGGAGCCATCTCTCCAGTCTTCCTGGAACCTTGTGAATATTGCTATTGGGCAGTTTTTCATGATAATGTGCATTCTGTGTATAG
Seq C2 exon
GTTCCGAGGCTTGTAAGTCATCTCCAGGAAGCATGGAGCAGGCAGCTCTGGGAGACAGCGCTGGCTATATGGAAGTTTCCCTGGATTCCCTGGATCTCCGTGTCAGAGGAATTCTGTCTTCCCAGACAGAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=NA C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types