BtaINT0025054 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57151746-57152225:+
Coord C1 exon
chr5:57151746-57151811
Coord A exon
chr5:57151812-57151991
Coord C2 exon
chr5:57151992-57152225
Length
180 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TCTCTCTCTTGGGTGGGTAGGCT
3' ss Score
5.44
Exon sequences
Seq C1 exon
GCCAAAAACAAGAGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCCAAGAAGAAATCCAAG
Seq A exon
GTAGGTACTTATATGCACAGGCATAACTTTGAAGTCACCAAACTGATTTTGCAAGACATGTGAGTTGGTCATGTTTTATAGTCATGTTTCTGGGTATAAGGTGGGGAGGAGGGGACCAGGGAAGGGTGGTGATTTGAATCTTCATGGCACTCTTGATTCCTCTCTCTCTTGGGTGGGTAG
Seq C2 exon
GCTGAGAAGGAGAAGGTAAAAACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAGAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGGCCAAGACCAAGCCAACGGGTAAAGCAGATAAAGTGCTGGCCACACAGAGGCGCTTGGAGGAGCGGCAGAGGCAGCAGATGATCTTGGAGGAGATGAAGAAGCCCACAGAGGACATGTGTCTGACTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.949
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(9.4=100)
A:
NA
C2:
PF0449910=SAPS=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAAGGAAGCCAAGAAGA
R:
TGTCCTCTGTGGGCTTCTTCA
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]