HsaINT0016793 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56999614-57000096:-
Coord C1 exon
chr12:57000031-57000096
Coord A exon
chr12:56999848-57000030
Coord C2 exon
chr12:56999614-56999847
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTCCTCTCTTCCTTGGGTAGGCT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GCCAGAAATAAGCGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCTAAGAAGAAATCCAAG
Seq A exon
GTAGGTGCATGTACAAACTTGCCAAGTATAATTTCGAAGCCACTAAACTGATTTTGCAGGACATGTACATCAGTCTTGTTTTATAGTGAGATTTCTGGGCTGTGAGGTTGGGAGGACTGGGACCAGGGAAGGATAGTGACTGATATCTTTATGGCAGTCTTGGTTCCTCTCTTCCTTGGGTAG
Seq C2 exon
GCTGAGAAAGAAAAAGGAAAGACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAAAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGACCAAAGCCAAGCCAGCCTGTAAAGCAGATAAGACCCTGGCCACACAGAGGCGCTTGGAGGAACGGCAGAGGCAGCAGATGATCTTGGAGGAAATGAAGAAGCCGACAGAGGATATGTGTCTGACTGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(9.2=100)
A:
NA
C2:
PF0449910=SAPS=FE(33.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAAACAAGAGACCAAGA
R:
CCTCCAAGATCATCTGCTGCC
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)