BtaINT0025061 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57132793-57143042:+
Coord C1 exon
chr5:57132793-57133020
Coord A exon
chr5:57133021-57142904
Coord C2 exon
chr5:57142905-57143042
Length
9884 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CTTTCTCTCCCCTCCTACAGAAA
3' ss Score
12.18
Exon sequences
Seq C1 exon
GGGGCTGGAAGGAAAAGGGGGCTGGCCGGCCTGATGTAGACCCGGGATGGGGCGGCGGGGGCGGGAGCGAGAGGAGCTGTGGAGGCTCCCGGCGACGGCGGAGGCTGCGAGGAGGAGGCGGAGAAGCCTCCTGGCTGGTGGAGATGACTCCTGTGGGGGACTCAGGGTGGAATCCCCGGGAGGGGCTCCACCTCTTCAGAAGGGGTGGGGATTACCCGAGTGCGAAGG
Seq A exon
GTAGGTGAGGGGGTTCCCTGGACGGGTTACACACTCCGTTTGTGGGGGTTGGGGCGTTTTGGCAACGGTGAGTGGAGGTTAAGGGCTTTCCAGGGGTCTCGGGGTGTCTCCTTGGCGGAGTGGAGGGGTGGGTGCACGTTCTCTTGAGCTTGGCGAGCAGGAGCGAGCCCTGCTGGAGTGAAGCTGTGCTTGGCTTGGGGCCCTCGAGTCCAGGGAGAATCCCCCACTCCAAGGATGGGGGTTGGTAGGGCCGGTGCTGAGGCGTCCGGATTTGAGCTGGGCTTAGGGGCCGGAGGGAAGAATAAAGAGGGAACCCTTAACAAGCGGGATCCCTCTCTAAGGGGATCCCCATTTCCGTGGCAGAAAAGATGATCCCGCATTATCCCTTTCTTTCCTGAGGTCCCCAGTTTTCAGGGGAAGGCAGTGCCATCAGCAGTCATCCTTTGTAGGATTTGTTGGAGTGAGAGATTTGCATCCTTCGGGGGGCGATGCGGGGGGATAGCTTCCACCTCCATCTGTACACAAACAGCCCCTCCCCCAAGCCTCCCGCAGGAAGTGGCCGGGAAATGGCAGCTGTGCGTTTGCTGCTGCGTCTCTTGTTGTTTTGAAATGTCCATTTTAATCAGATTTGGTTTCAATTTCTGAGGCCTTCAGGCAAGCTTGGATCCTGCCAACCATGTGGTCTGAGAGTCCTTTCTTTCGACTTTTTTTTTTTTTTTCCTTTTTAGTAAACTTAATTTGTCAACTGAAAGTAGTCACTGCGGTTGCCTCACTGATCCCAATCCCCCCTCCAAAGCATCTCTGTCTCCTTGTGTGGATTTTTTTCTCCTGAGCTAGAGGTCATAGAAAATCAAACTCACTCATTCACCAGCAGGGCTACACTTTCAGTACAAGTGATGCAAATTCCCTGAGTGTAAAGAGCAGCCAGGAAGACTTGGGATCTTTTGTGGCATGAGAGTGGCTTTTGGAGATGTGTATATGAATATTAAATATATTCTTACATATGACAGTTGCTGTATTGCAGACCACTTGAGCAAGTGAGCTTGTGAAGAAGTTAATTCTGAGATGTGGAAGAAGAGGAGGGAAGGGGGAAGATTTAATTGAGTGGGATTTATGTGTTGGGGTAGGACTGATTTGCAGAGTGAGGGTGGTGGGCTTGTTCCTCAGTGGTGATTCTAGCCTAAGAATAAGTCCCTGTTGGAAGCCTGCTAGTTAACATCAGGGATGGTTTACCTTCTGCAGAAACAACTCATTAGGAGAGTTAGTTATCATATGACTTACGCCTCAGTTCATAAAAGACATTCTCTCTTATTACCCTTCATGGAGAGCGGTAACCTTTTCCCCTGTTCTATGCAAAGTCATGTGTCTGTGCGAAGATTTTCTTTTTCTCCCACCTGATAATCCCAGGAGATTTTTATTGCAGCGGACAGTGATGGACTCTGTACTATGCCCCCAGGCACTTAGTTAGACCCTGGATTTGGTTTGAGGTGAGTTGGCCACAGGATTTTATTTATATTTTGAGAGATGGAAGTATTGAGATCATTTGAACTACCCTGAAGATGGCTTAAGCCTAACATTTAAATAATCTTTTCAGTATTTTCCACCTGAATTGTAGATTCTTATATTAAAGGTCCAGGATAGGACCTGGTAGACATATATGATGATGTGACAGCGGCATCATCACTGTTAGGATAGCAGCATTGCTCTTTTTACTGGGGCTGTTGGAGTTGATATTCTGGAAACAGTAAAAACAAGTTCAGTGTCATTGTCCTTTTTTTTTGCCCCTCTGCTTGACTGGTTGGCTCCTTTGAGTTGCTTTCTGACAGGGTTGACTTGACACTGATTTTTAAGTTCCCGTTTCTTCAACCTTTGTTTACCTAGATTCGGGCCTGACAGAACAGTAAATTGGTTTTCCCTGTTGGAAATTAAAACAATAAAGGAAGGAGAAAGACTACTCCTGTTTCTTTGGACTCTTTAAGAGAAGTTGATTTTTGAGATAGCTGTGGCTTCATTCGATGTGATTGATCAGAAAACTGAATGAAGTAAAGCTTTCATGTCCTTTTTGTAAAATGGATGTATTTTTCTCTCAGAAGTGGATTTCTGAATATTGACTTTGTTGGTTTTTTTTTTTTTTTTTAAGTCTCTCTGTAGAGGAGAAAATTTGAGATGTAGAGAGAACTATGTGGGCCGACCTCAGAGTCAGTCAGAAATCTAGAATGCCCTGCGAGGCTCATCTTGCAGTCTTGTGGTTCTGGAATTGGGTGTTGCCAAGGGAGAAGCAAAGCTTGTTAGGGTTACTGTGTCTTGCTCCTGTTGACCTTTCTTCTCACCTCTGAAGAGGTCTGCTATATTCTTTTACTAAAATAATAAAATAGTTAAAATAATGTGGAAGTTATTCCAATAACTGGTATGCTGCTCAGTCTTGTGTGAGATGTGTACAGTAAGGCAGTAATGTCAGAAATTTTATTTCCTATGACATAGAGTGACTTATAAAACTCTTGAGGATTTTGTGGGGCAAGTAATCTTCTGGATTTGTTTCTTAGGATATGAATGTTCTCATATACCTCATAGCCCAAGATTATACTTTCTCAGCATTGTTGCACATGGGTCAGAGGGACCATTTTTCACCATCTTGTTGTTTTTCATAATTCTGATCTATAAAATTATAAATTTATAAAACCTGCTTCACTAAACGGGATCTTTACCCTGCCTTCCCAGCTCAGGTGTTTTTTTGTTTGTTTGTTTGTTTTTTGAAGAAAGGGGTGAAGTCTGACTGTTAGAGCTGAAATTGAGAAACAGAGCTTGAAAGGGAAATAACCTTGTTACAGCCTCTGGAGTGTGGCTTTTAATGTCCTGCAATTTTAAAGGCATTTCCAGTTCTCTGGTGAAGTGACCAGAGCAGTGGCAGAAACCTAGCCTAGATTGTTGGTATGTGGTTCCTTTATTCAGTCACCAAAGATTTTAAAACCTGCTGTATACCTTGAGTGTTCAGTTAAATCATTCTTCCCTGTTTCTAGGCCTTATTTTCTGCATGAGACATCTGTCTAAAATATGTCAAGATTTGGGGCCTTTCTTCCCTCTAGAAGAGTTACCTCTATGAACAATGAAACTGAATTTTTTGTGTTCCTACTATTCTCTGAGAATGGTAGGAGCAAAAAACCTATTCTATATTGGATGAGTAAATTGATAGTAACACGAAAAGATAGGTTTATTCATTCATTTGCTTAATCTACAGGTTCAACAAATATTTCCTTTCATTTTTTTATGTACTCAGCACTAAATTAAGTGCTGGAGATATAATGGTAGAACTAATACCTGGTTGATGCTGTAGAACCTACATGTGTGCTCAGTCGTCAGTCTTGTCTGATTCTTTGTGACCCCGTGGACTGTAGCCCGCCGGGCTCTCGAAGTTCATGGGGTTTTCCATGCAATACTGGAGTGGGTTGCCATTTCCTACTCCAGGGGATCTTCCCAACCCAGAGATTGAACCCATGACGAACTCTTGAACTGGCAGGTGGATTCTTTACCACTGCGCCACCTGGGCCCCCTAGACCCTACATGGTATAGAAGAAATAAGAACAGAGAACAATCATCTTTGTGTTCTGTGCAGCTTGGACATGGCAATTGTCTTTGAATAGCTTTCCTTAGTATAATAACCTTCCTTCTTTCATCTTCCTTCTGCCTCGCTGTCCTGACTAGAAAAGGGAGGTTAAGGAAAGGACATTATAAGAGAATGATCCTCAGTCAGTATGGCTATAGTCTGAGTCAGCATTCCAAGGGAAGTCAGTTACCAGTGCTGTCAAAATGGACTATCCTGACAGGAGAAGAAGGCATGTTGATTTTGTGGCTTGACACTTGTAACTCTATTGGTGGAGGAAGACAGCCTAGCCAGGGAAGGGGTTTTTAGATTTGAAAGGCAAGTCATCCTTGTTTGCAGCATCAGGCATTGGGAATAGTGAGAACTTTTGGATCTTCCCCAGAGAATAGGATAGGAATGGGAAATGAGGCTGCTTTTGTATTAGAGCAGAGTTTTTCAACCTTGAGCAAGAGCTAAATAATCCTTTGTTGTGGTGGGTTGTCTTGTGTATTACATGATCATTAGGAGCATCCCCAATGTCGATTTCTTAGATACCAATAGCATATACCTTTCTCCATAACTAAATGTCCCCTGGTTGGGAACCACTGTATTAGAGTATGGTGGGTGAATCCAGAGATATTCAGTGTTCAGAAATATCATAACATGCACCATTACAAATCTAAAATGTAGTCATATGATTTATTTACTATACTGCAAGATTTACATTCACCGTTTAGTAAAGACAGGTGTTTGAAATCTCTTCCTAGGCCCCCATATTAGAAATCTCTCTGGAATTTTAGCATTCTGTATGGGAAGAATGAAGCAAAAAGGTGCAGGCATTGCTCAAGGGTCCAGCTGGGTGGTGTTGATGTGTCTTGTTTGGGGGTAGGTAGCCTCAGAGGTCTGAGTGTTGGTGTTGGTCAGGGCACCTGCAACAGTGTTGAAATTTGCAATGTTTATTTCAATACTTTGTGCATTGTCAGCCTTTTTCTGTTAAAGCCGTGTCACAGGTCCACAGAGTAGTACCTCTTCAGTTGCAACTGAGAGAAAGAGCAGGCTGTTTGGCCATGTGGCAAGAGCTTTACTGCCTCAAGCTTAAGGGGCAGTGTCCCTCCTTTAACTCTTATAAATGAAGCTTAAAGGCTCTTAAGAGATCCATTTACATAGTACTGGGACTGGGCTGGGTGCTGGCCTGATTGTACTTCCTGGTCAGGAGAGATGTCTACTATTCTGGGAGTTGGGCACTAACTGATTTCCTTTTTTTATTTGGCCAAAATCCTGTTAGTTCAAAGGGAGACACTCTCCTTTGCTTTACTGTTCTCATTAGCTCTAGATGGGAAGACATGATTTACCTTCAGGCCTCATCGTGAAAATCATCTTGGGTAGAAAGGTTAAAATAAAATACCTCTGATTTTATTGCTGAGAGTACCTGCCCACATTTTCTTTGCATTCCTGTACTGTGGTGCCATATTTAAGTGACGTCTGAAATTAAAAGGCGCTTGCTCCTTGGAAGAAAAGCTATGACAAACCTAGACAGCATATTAAAAAGCAGAGACATCACTTTGCTGACACAAAGGCCCATATAGTCAAAGCTCTGGTTTTTCCAGTAGTTGTGTACGGATGTGAGAGTTGGACCGTAAAGAAGGCTGAGCAGCGAAGAATTGATGCTTTCGAGTTGTGGTACTGGAGAAGACTCTTGAGAGTCCTTTGGATAGCAGAGATCAAACCAGTCAATCCTAAAGGAAATCAACTCTGAATATTCATTGGAAGGACTGATGCTGAGGCTGAAGCTCCAAAACTTTGGCCACCTGATGCAAAGAGCCAACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCAGGAGGAGAAGCAGGTGACAGAGGATGAGATGGTTGGATGGCGTCACTGACTCAATGGACATGAATTTGAACAAACTGGGAGATAGTGAAGGACAGGGAAGCCTGGCATGCTGCAGTCCATGGGGTTGCAAAGAGTTGGACACGATTGCGCGCTGAACCACAAAAGTATACAGTGAGTCTGGCTGGCAGGATCATCCCTGCTTTTGTAATATCTCTCATAGTAGTAAAATAGTAATGGTTTTAAAGTAACTTGTCAAGGTCACACAGCTAGTGGTAGTAGAGCTGGAATTAGTACCTAAAGCCCACTGTTGTTCCACTGATCTCACTGCACAGCACAGAGTATTTTATGTTTCTTTCTAGGAAGTTTCTTATAAATGAAGTGATTGTGGTACTGGTGACCCCTCAGTAGAGGCTGCTGGGGAAATAGACCTCAGGCACTAGATCACTTCTCATTCCTTTTACTTATCTGATTTCTATAAGCCATCCATTTATGCTTGCTGCTGCTGCTAAGTCGCTTCAGTAGTGTCCAACTCTGTGCGACCCTATAGACGGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGCATTCATGCTAAGTCACTTCAGTCATGTTCCACTTTGTGTGACCCTATGGACAGCAGCCCACTAGGTTCCTCTGTCCACAGGATTCTCTAGGCAAGAATACTGGAGTGGGTTGGCATTTCTTTCTCCCTGTTTATGCTTATTAGTATATAATTTGTGAGACAGGAAATGGTATACTGTCCCAGACTAGCAGAGATGAAAAAGTCACTAGTTTCCTCATGGATTCAAACAGAAAAAGGACAACTAACTGGCCTATCATTGAGTGGGAGAATATAGTCCAGCAGATATAGGAGAGAAGATGTGTGTCTCACACACCCCAGCAGATATGTGGCTGTGCATAAAACTGGAGGAGTGGAGAGGTGGGGATCAGATGAGATTGGCTGTCATCTGATTATCAAGCATAGCATTTCTAGACTTGTATAATGAATTACTGAATATCCTCTCTGTGATGTAAGTTTGTTTATAGCTTTGTTTATTATTATTTTGGCTGTACTACCTGGCTGGAGGGATCTTAGTTCCCCGACCAGGGATTGAACCCAGGCCCCAGTAGTGAAAGTACCGAGTCCTAACCACTAGACAAGCAGGGAATTCCCTGTGATGTACGCTTTCCCAGGTGGCTCAGAACCTGCCTGCCAATGCAGGAGATGTGGGTTTGATCCCTGGGAAAATCCCTGGAGAAGGAAATGGTAATCTACTCCAGTATTTCTGCCTGGGAAATCCCCTGATGAACCGAGGAGCCTGGTGCTATAGTCTACGGGATCGACAATCCATGGGGTCCCAAAGAGTTGGACATGACTTAGTGACTGAGCATGCATGCAACCTAGGAGATAGAGGATGAACTTTTCTTCCTTAATGTCTTTCATTTTGGAAGGATCACTATTCTCACAATGCTTATTTATCAGACTGTTAGTGCTAAGGAGTGGCCTTTAACTATAGGGAAATCTTGGAGGGCCCTGAGGTCTTCTCTGTAGGGACCCAGTTTCTTCATTGATGCCTAGCAAGTTTGGATCTGCTGCTTATTTTAGAATGAAGATGGAAATCCTGTATGGAAAATAAGTTTATCCTAAAAACTTTTCGTTCCTTAAATTGACAAAATACATTGGCTTTTATTTTTCAAATTCTAGTTAAAATTGATGAAGGTGGAGACAATTACAGTATTAAGCATGGAAAATCTTATAGCTATCATACCATATGCTATATTGGGTTTTTGTTTCATGCTCAGGTTCTTAGGTTCACCTAATGGTGGCCGATTTGTATTATCTAGCATGTTCAAGAATATGGTTCTTACAAACCTTGGGCAGTGGTCTTAAATATTCTTAACTAATTTATTCATTCTTTAAAAAGCTTTACTTCTGGTTATTTTATTTTTTTAAGAAGTTATTAAAAAAAAAACCTCACCTAGGGGACTTCACCCTGGTGGTCCAGTGGTTAAGACTCTGTGCTCCCAGATTTGACCCCTAGTCAGGGACCTAGATCCCACATGCACAACCGAATAAAAACAAAACAAAAACTGTAACCTAGGACTTCCCAGGTGGCACAGTGGATAAGATTCCATCTGCCTGTGCAGAGGACATGGGTTCAATCCTGGTCCAGGAAGATTGCACATGCTGCAGAGCAACTAAGCCCGTATGCCACAACTGTTGAAATCTGCGTGCTCTAGGGCCTGCAACAAAGAGTAGCCCCCACTCTCCGCAACTAGGGAAAGCCTTCTCGCACCAATGAAGACCCAGCACAGCCATAAATAAATAAAATTATATATTAAAAAACACACATAACCTAGGTCTGCTTATTATTTCATCTTGGGAGCTTGATAAATCTTTCTACCTGAATTCTTCTGTCCTTTTTCAAAATGTAGTAACCAGAGGAGTTGCTTTTTCTGTATCACAACAGATCATGTCTCTCACAGGTCAAATTAGTATGTGCTAGTATATCCTAAGAATCTGATTGATGTGTCAGACTTTGCCAATAATCCTAGCTTCTGTTTCCTATCTTTCTTCCTTTTTCTCTTTGCTCTATCAAAGGTAAATTTACTCTTTAAAAAAAAATTGTTTGTTTAATTTTTATGAAGATCTATTTATTTTCGGCTATACTGGGTCTTAGTTGCCACACACTGACTTTGTTCAGTTGCAGCGAGCGGTGGCTAGTCCTTGTTGTAGTGTGTGGGCTTCTCATGCGGTGGCTTCTCTTGTGGAGCACAGACTCTGGGGCGGTCACGCTCAGTAGTTATGGGGCACGGGCCAAGTTGCTCCACTGCATGTGGGTTCTTCCTAGACCAGGGGCCAAACCCATGTCCCCTGCATTGGCAGGCAGATTCTTAACCACTAAAGTTCCTCAAAATAATTTTATTTATTTATTTATTTATTTTTGGCTATGCTGGGTCTTTGTTGCTTCAAGGGCTTTTCTGTAGTTTTGTACAGAGGGGGCTACTCTGTAGTTGCAGTGTGCGGGCTTCTCATTTTGGTGCACAGGCTCTAGGGTTCATGGGTTTCAGTAATTTTGGCTCCCTGGCTCCAGAGCACAGGCTCAATAGTTGTGGCGCATGAGCTTAGTTGCTGTGTGGCATGTGAGTTCTTCCTGGACCCAGGATCGAACCCATGTCTCCTACAGTGACAGGCGGCTTCCTTACCACTGAGCCACCAGGGAAGCGCTAAAGATAAATTTATTCTAATCAGCATTCCTACTAGTATATCACCTCATATTCAGTAGAGGGTAAAGAACTTTTTAACCATATTTCTCCCCAATGAGCCACTGCATTTTACAGTTTAAGTACCTAGCAGTTCTCTCAGTGACCCTTTACATTTAAGCCACAAAACCAAAACATGGGGAAGTAGTCATAACAAAATACTGTTCTTTAGTTTTCCAGCTCTGACACTTTTCAGAGCTATGTTCTTGAGAGCGTAGGATTTCCCATGAAAAAGGAGTAGAAGTGTTACTTGATGATTTGAATTTTGCCATTATGATCAGCTTTCCTGAAATGTGTGCTTTTCAAATTCCTTTACTCAGGTAACTATACTGTCTTCTGATGTCTGAGGCTATAGATAGGATAACATGAAAATTAACTCAACTATAATAATACAACATGATATGTATTAAATATACGTTTTCTGCCAACATGTCCATGCTTTCCTGTCAAAAGATGGCTTTGGGAACCTTCTGTAGACCTTGAGAATGGGACTCTGACCTTAATTGAGGGGGAGAAAAAAGGATGGAGAATGTTTGATTGAGGGCTAATATCTTAACACAGAGGGGTAGCCTGGGCTGGGGGTTAAAAGGGTGGAGCTTATACTGGGGAAAGACTCCTCCAGGCAGCTATTTTGGTTTTTCTCCCTAACTCTTTGTATCTCTACAAGGCTGATTTTTAAAAAAATACTTTCTATAGGGTCATTGCCCAGATTGAACGTGAACGTGAAGTCACTCAGTCGTGTCCAACTCTTTGCGACCCGATGGACTGTAGCCAACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCATTAGTACTCGAGTGGATTGCAATTTCCTTCTCCAAGGGATCTTCCTAACCCAGAAATCAAACCCGGGTCTCCCGCATTGTAGACAGACGCTTTACCGTCTGAGCCACCAGGGAAGTCTAGATTAGGAGTATATTTCCTCTTCCTCTTCTCTTTTTCTTCAACCCCTTTTCTCCCCACCACTCTGCCCTGTCCAGTACTTATATAGGAGAAGGGTAAGTAAAGTAGATGGAAGGGTGGGGGCATTACTTCTAGAATATTTCAGGTGACATAACCTTGTTTAACCGCTAGTATTTTTTTCCCCTTTCTCTCCCCTCCTACAG
Seq C2 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCCCCTGCACCTGCTGCCTCAGGACTGAAACCCTCTCCCTCCTCAGGGGAGGGGCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]