BtaINT0025064 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57156339-57156819:+
Coord C1 exon
chr5:57156339-57156561
Coord A exon
chr5:57156562-57156663
Coord C2 exon
chr5:57156664-57156819
Length
102 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATTACACAAACTGTTCACAGAGA
3' ss Score
4.61
Exon sequences
Seq C1 exon
GTGAGTAGAGCCAGTGCTGCCAACGCCTATTCTCCAGGGCCATTCTCTTCTACTCCTTTGCTGGGCATGGCTCATAAAAGGCAAGCAGGAGATCCTGGAGAAACACCACAGAGCCCCACAGGGCAAGGACAGCCAAAACGAAGAGGGAGACCTCCCAGTAAGTTCTTCAAACAGATGGAGCAGCGCTATCTAACCCAGCTGACAGCCCAGCCTGTCCCACCTG
Seq A exon
GTGAGTGACCCTGGGGTGGGATGGAACGAGAGTACAGGTAGGAGTGGCATCAGATGCGGACCACGTAGTTCCCGTTGCCCACATTACACAAACTGTTCACAG
Seq C2 exon
AGATGCGCTCTGGCTGGTGGTGGATCCGAGATCCTGAGACATTGGATGCCACGCTCAAGGCCTTGCACCCCCGAGGCATCCGAGAGAAAGCACTTCACAAACACCTAAACAAGCACAGGGACTTCTTACAGGAAGTCTGCCTACGGCCCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCATGGCTCATAAAAGGC
R:
GTGCTTTCTCTCGGATGCCTC
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]