HsaINT0016803 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56994727-56995186:-
Coord C1 exon
chr12:56994964-56995186
Coord A exon
chr12:56994883-56994963
Coord C2 exon
chr12:56994727-56994882
Length
81 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TATATCTCATCTGCTCACAGAGA
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATGAATAGACCTAGTGCTGCCAACCCTTGTTCTCCAGTGCAGTTCTCTTCCACGCCCTTGGCTGGGTTGGCCCCTAAGAGGCGAGCAGGAGACCCTGGAGAAATGCCACAGAGTCCCACAGGGCTGGGACAGCCCAAACGGAGAGGGAGACCTCCCAGTAAGTTCTTCAAACAGATGGAACAGCGTTACCTAACCCAGCTGACAGCCCAGCCTGTCCCACCTG
Seq A exon
GTGAGTGACCTTGGAGTGAGGGCATCCGGTGTGGGCAGTGCTTCACAGCTGGCGCCCCACATATATCTCATCTGCTCACAG
Seq C2 exon
AGATGTGCTCAGGCTGGTGGTGGATACGAGATCCTGAGATGTTGGATGCCATGCTCAAGGCCCTACACCCCCGAGGTATCCGGGAGAAGGCACTTCACAAACACCTTAACAAGCACAGGGACTTCTTGCAGGAAGTCTGCCTGCGGCCCTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTACCTAACCCAGCTGAC
R:
TGCAAGAAGTCCCTGTGCTTG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)