BtaINT0025084 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37069096-37073407:+
Coord C1 exon
chr2:37069096-37069133
Coord A exon
chr2:37069134-37073335
Coord C2 exon
chr2:37073336-37073407
Length
4202 bp
Sequences
Splice sites
5' ss Seq
ATAGTCAGT
5' ss Score
-1.21
3' ss Seq
CTTTGAGACCTGTTTTCCATGCA
3' ss Score
-3.73
Exon sequences
Seq C1 exon
CAAAGTTAATCAAAGTAGAGCTTAGGTCTACTTACATA
Seq A exon
GTCAGTTACATAATGCCTATTTTAAAGTCAGCATTAGTTCTAGAATAAAATAGTAGCATGTGCTTCTAGATCATTTATTCTACCTAGTAAACCAATATCACCAGGTAGTTTTCAAGGAAATATTCTGGAAGCTTGCAAAAGTATTATTATGAAACAGAAGGAACAAAGGCATTGGAATATAAAATACACAGCTCTGTAGTTTCCTTTTGATTTAAGGCAAAATATTTATTTTCTATGAACTTTAGTTTTCTTTTAGTAAAATTTTATTTAGAAATTTTTTTTAGCCACACCATGTGGCATGCAGGATCTTAGTTCCCCAACTAGGGATCAAACTCATGCAACCTGCACTGGGAGCACAGACTCTTTAACTACTGGACTGCCAGGATAGTCCCTAGTTTTCTATTAGGTAAAAAGAAGAAAAGTTCAACTCTTTTTATGATAAAAAAGGATATTTTATATAAAGAGCTCAGTTCATGTATTGTATACCCAATATTATAAGGTAAACCTATATTAAAGAAATTTATAAAAAATGTTTATCTCTGCTAATGCTAATGACACCACTACCAAATACACACACACACACACACACACATATATTACATATATATGTCATATATGTGCATCATATATATATATATCTCAACTTCAGGATAAAGCTTCAGACTGAGTGTACATAAGATAAGCATTAAAAAAAAAAGAAGATTTCATACCTATCTATGTATGTAAGAGAACAGTGAATGAGTTTTGCTGACTTGGGAACATACCACGTTATAGGATTAATAAAAGCGGAAAAATTAAATAAAGAGCATGCTTTATTTAGGTCTCAAGTTCAAATCTAAATAAATACTTCAGATATGGATCAAGTACAGCTTTCTCTTGGAAATGAAACAAAAGATACATTAGGGCTTTTATTTTTTGCAAGCTACATTTAGTATTCAAAACTAAGATAGCGTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACCCTTTGTGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCGCCAACTCCTGGAGTTCACTTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTTGTCCCCTTTTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAATCAACTCTTTGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCTGTAGCATCAGTCCTTCCGATGAAGGATAGGGTCACCAATAGCAAAATTATAGAATGTGAACAGTCTTCTAAAATCAGAAGAGTAATTCTAGAAATCTCATTACCCTGCAATAGACTCCTATAGAGGATTGGTAACATCAGTGTGCAAAAAAAAAAAAGAAATGTTTAAAAACACATTGACATGTAGCTTGAAAAGATACAACTAGCACCTGGAAATTGAAGCAGGTAATGTAATTTTTCATCAGTATAAGATGTGTTGGCTGTAGAAATAGTACAACAAATGCAATTTGCTAGTAGGAAAATTTGGGTGTTTGGGAGAAACTGTATTATTATCATGGGTGCCAATTTGGGACTTTCAAAGAGGGTTATGAACATGAAATTGTTAACGTTGGGCTTACAGCATATGAGATAATGTTTATATCAAAATGTAAAGTTTTATCAAACCTAAATTCGAAAACAGTAACTAATACATTAAATTAAGACAATATGAACAAGTTTTGTCATGTGAATAATTTTCTACAATGTTGCATTGTAATTAATCCTTTTAAAATTATATTACAGATTATTTCTGAATCTGTCTTATTGTAGTAATTAAAAGCAGTGTATCAATAATATTATGTTATTCACCACCTGAAGTAAGAAATTATAGTATGGAAATTGTTAATAATAATCTATTATAGTTGTGTGCCACTACACACTTTTTTAAGCATTTTTAATTTAATCATGTCATAGTGAGAAAGGACAAGTACGTCTCCCTGGTTTATGCAAGAGTAGTTATTCTATGCTCAAGATTATCCAGTGAATGACAGTAACTCCAGATTAGCCTTATGTTTTCTCACTCCTGTTTCTCATTACTGTTTCTCTCTTATTCTGTCCTGTATTTATTGCAAAATAGTTATAATTGCAAATATTTATAAAAATCCACAGGCTGAATGAGTTTAATCATATTGGTTTACCTGGTTTCTATATACTTACGTAACATTTGTATTTTACAAATGGTTTTAAGAAACTTGATAAAATCACATTAATTTGACATGAACATACATATATGATATTAAACTACATCATAAATTGGATAAATTTATCCCATGTTGGATAAATTTTATATCCAACATGGGAAACTTAATATCTTAAATTATTTGATTCTACTTAAATACTTTCCACTTGGATATTTAGTTTATTATCTTAAATTGTTATAATTTTTTTCTACAGGAAAAAATTAAGAGAATACAACAAATCAGAATGGAAAAAGAGCTTCGAGCCCAGCAAATTCTAGAGGTAGAATTCTTAAATGTGATATGATTAAAGTAAATAGTCACATATTTTAAAGTCTGCAGAATTGAAAATCTTACCTGCGTGGTCTCTCACTCTTACAGTATGCCCATCAGAAATTTGTTTCAAGCATAATGCATAGAGTAAGACCTTATTTAGCAAACTCATCTTATCCTAATAACCCGGGAAGTAAGCCAAAAGGAAAAACTTCTGAGCAACCAGTATAGGTATCATACAGTTCATGGGTCAAAGTCGTGTTATGTACTTCTAGAAAAGTCATTAGGACTAATAGATATTTACTTTTAATTTAGAAATAAAACATTGCAAAAGTGAAAGTAAATTTTAAATGTAGGAACAAGTTTAACCAGCTGTTTTTTCTGGTTTCTAATACGCCTTGCTTCCCTGGAAGCTGATGGAATAGTACTAGAGGACATACATTGGAATCAGTAAGGTAATAGCCACAAGATAGCAGGGAAAAATACAGAGAAACTCCAACCAGCATCTATCGGAATTCAAAAGCCTAACAAGATTGTCTGTAATCTTTTGGTTGACTAGCAAGCAGTTTTCAACACCTTATTATTAATAACTGAAATGCATTACTCTATTGAACTGTACAGTATAATAACTGATGTTCAGAATAATTCCCCCAAGTCATCAAGAAAAAGCCAAATTATAGTTAGTATACTGTATCTAAATAGTATATATCTCAAAAAAAATAAATAGTATATATCTCAAAATTATTGCCATCCAAAATTTTGAAAATAAATATTCAGTGTTTAACATTGGTGTAGCCTCCCAGCTGGGCTTCCCTTTTGGCTTATCCACATGCACTGCGGGAGACCTGGGTTGTATCCCTGGGTTGGGACGATCCCCTGGAGAATCCTCATGGACAGAGGAGCCTGGTGGGTACAGTCCATGGGGTTGCAAAGAGTCAGACACAACTGAGCAACTGAGCACAGCACAACCTCCCAGCTATTCAGCGAACTATTGCTATATAGATGATTTACCCCTGAGGGTGTCAAATAGCTGAAGCTTTCTTTTGTATGATTTTTCCTTCTAGAAATATACACATATTTCCTAACCCATTTTAAATAAATTTTAAAAATCCAAATCAAAAGTACTAATATCTTAAAGTAAATTAATAACTACTGAATAATTATGAAACTACTAGATAGTTAATGACTTTAAGATTATGAAGCTCAGATTTGGCATCATGATCTTGATATTCAAAATGTACTTCAAGAAAGATTGTAAGTTTCCATTCTGTCTTAGAAACCTCGAATTTAATCACAATAAACAGCTAGAGAAAAATAGCGTATATTTACTGTTTAAAGTCTACCCCATCTTCTTAATTTTATATAGTGATCATGTATTACTTTTAAAAATCAGAAAAAAGCAAATATTATATAAAAAAAACTTTTTCTGTGATTGTTTTAATGTAAAATAAACAATTATTTCAGACTTTTTAAATAGAATTGAAAAAATCAAGAAAAGCTGACATATTCTAAGAAATTTTAAGAATTTTTTACATCTTAATGCTAATCTTTACATTAGAAATGAAACTTAGTTTGTAAATATAATATTAACTATGAGAAAATCTGTAATTGTCTACATATATGTCACATGTTGTTTTCTCTCTCATGAGTCATGTAGCTCCATGTTCAAGTCATAGATTATTTTCAGGTTGCAGTGGTACCGTTGTATGACTTTGAGACCTGTTTTCCAT
Seq C2 exon
GCACAGGCAAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAAATTATTGGAGGCCGAGAAACGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.670
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]