GgaINT0050411 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38221011-38221531:-
Coord C1 exon
chr7:38221466-38221531
Coord A exon
chr7:38221077-38221465
Coord C2 exon
chr7:38221011-38221076
Length
389 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
GATCTATTTTGCGTGCACAGGCA
3' ss Score
7.98
Exon sequences
Seq C1 exon
GAAAAGATTAAGCGGATCCAGCAAATCAGAATGGAGAAAGAACTTCGAGCTCAACAGATTTTAGAG
Seq A exon
GTAGACATAATGGCTCAAGTAACACAATTCTTTTTTTAAGAATGCTGTCCATTAGGAATCACACATGTAGTGAAGTGTGTAACCAAGTAAGCAGATCTAACAACACACATTTAGGGGGGTCAGATCAAAAATTTCTGTTCTTAAATATTTCATCTTAAAAAAAAAAAAAAAAAAGAATAGAAATAAGGAAACCTAACTTAAACCCAAATCTTGGAAATACTCATGAGTTCCTTACTTCCTGCATAAATAATCTTGTTATCCAAAAAATTGCTTGGAATGTATTCTTAATACATAATGTCACTTTGAATGCTTTAAGGTGTAATTTATTTCTAGACAGATTATTTTCAAATTGTGATGTTCTTGTTGAGTGATCTATTTTGCGTGCACAG
Seq C2 exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]