BtaINT0025169 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26806307-26807899:-
Coord C1 exon
chr2:26807837-26807899
Coord A exon
chr2:26806442-26807836
Coord C2 exon
chr2:26806307-26806441
Length
1395 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCATTATTTCTTCCTGTAGAGT
3' ss Score
8.87
Exon sequences
Seq C1 exon
CGGTCAGTAAAGATTAGAGATTCAAAATTTGGTTTAGCTCTTGTCATAGAAAGCTCTCAGCAG
Seq A exon
GTAAGATGTTTTATATTTTTATTAATCTTTAATAGATTTTTAAAACTGTATGACAGTCTATATTTTTAGTTTTATTTATATAGTAACCAGTTTATATCCAAGAAGAATATTAGCTGTAACATGAGGTTAATTGTTCCCATGGAAAGAATCCTGCTTATGTTTCTCTATTGGGCAGACATATTAATTATTACTATGGTCATGACATTATCTCAGTCTTTATATAACCCTATGATACAGTTACTATTTTTCCCCATTTTACAGTCAAGGAGACTGAGGCTCAGAGAAGTTAGGAGGCTTGACCGTGGTCTTATAAGTAATAAGTGGTAGAGCTAGCTTTTGCTTCTAGGTCTGACTGATTCACAAGACTGAGCAGCACAGGTATACACATACACACACCCTATTTGAGATTTTATACTACCAAACACAGGTTATACTGTATCTAGTTAGAAACTGCTCTGCCCCATTATGCCAGGCGTAATTTATTCTTATAAATTTTTTGAAAGAGGTGTTTCTCTTCTGAATTCTAAATTTAAACAGGAATGTCTACTCCTTTCCCCTGGCCTATAGATTGGTAGCTGCCATTTACTGAGTGTTTACTATGTTCACAACAACATGATAACCATTTTATGGTTATAAAATTAAAGCTTAAATGGGAATTCCCTGGCAGTTTGGTGGTTAAGAGTCAGCACTCTTATACTGCCATGACCTGGGTTCAGTCTCTGGTCAGGGAACTAAGAGCCTGCAAGCCTCGTGGCACAGCCAAAAAAACACACAAAAAAACAGCTTAGAATCTCCCAACATCACACAGCTAGTAAGTTTGTTGTAAAACCAGGATTTGAGCTCCAAAACATATACTCTCACCCCAGAGCAAATTGCTCTCAACCATCACCATATGGGTACTTAATTTTTTTAACACTTTTTCTCCAACAACAGGTATGCCATTCCCTTTTGTCTTTTAATATATAGTCTATTCATTTTCAAGGTCAAGCTCAGGAAAAACTTAATTCCCTTGACCTTCATAATCTACAGTAGTGTATTTTTTTAATCTTGAAATATTACCTTTTATATTTACAGATGAATTTATGTGATATCTGGATACTTCAAAATAATTCTGAGTGGGTAAGGGGAGGAGATTTGGGGGATGGGAAAGTTAAAGATGGAACAGAGTTGGCCATATGTTGTTACTTTTTGAAGCTGGATGATAGCTACATGGACAGTTATTGTACTCTTCTGTTTTTGTGTATGCTGGAAGTTTTTATAATAAAAAATTTAATTAAAAAAATCAGCTTACATATTGTGTTCTGAAATAAGAACAGTTAGAACTATAATTTATCATATGTTGTAAATATGATTCCTCAGGCTTGTTTTCTGTTTTTTCATTATTTCTTCCTGTAG
Seq C2 exon
AGTGGAGGATATGTTCTTGGCTTTAAAATAGATCCTGTGGAAAAACTACAAGAATCAGTTAAGGAGATCAACTCACTTCACAAAGTCTATTCTGCCAATCCTATATTTGGAGTGGATTATGAGATGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736:ENSBTAT00000014216:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.0=100)
A:
NA
C2:
PF072896=DUF1448=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAGTAAAGATTAGAGATTCAAA
R:
CTTTTCTTCCATCTCATAATCCACTC
Band lengths:
198-1593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]