HsaINT0016927 @ hg19
Intron Retention
Gene
ENSG00000163093 | BBS5
Description
Bardet-Biedl syndrome 5 [Source:HGNC Symbol;Acc:970]
Coordinates
chr2:170354137-170356130:+
Coord C1 exon
chr2:170354137-170354199
Coord A exon
chr2:170354200-170355995
Coord C2 exon
chr2:170355996-170356130
Length
1796 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATTATTTTTTCTCTTGTAGAGT
3' ss Score
10.67
Exon sequences
Seq C1 exon
CGTTCAATAAAGATTAGAGATTCAAAATTTGGTTTAGCTCTTGTCATAGAAAGCTCTCAGCAG
Seq A exon
GTAAGATCTTGTATATTTTTATTAATCTTTGATTTTTAAAACTATGTGACAGTCTAGATTTTTGGTTTTATTTATATAGTAATCAGTTTACATCTGAGAAGAATATTAGCTTTAATATGAAGTTATATATGAAGTGTTTGAAGTCATACAGAAATTGTCCCCAGAGGAAGAATCCTGCTTATATTTTTTTGTTGGACAGACATGATCATTTGTGATCATCACTTATTATTAATGACAGAATCAAGTCATTGTGCCGAGGGCTTTTCATGCATTATCTCAATCTTTACACAATCCTACGATACAGCTACTATTTTTCCCCCATTTTATAGTCAAGGGAACTGAGGCTTTGAGAAGTTAGGAACCTTGACCATGATCTCACAACTAGTAAGTGATGGGGCTAAGTTTTGATCTCAAGTCTGACTGATTTACCAAGACTGTCTTTGAGAAACACAAACATATATTTGTGTACACACACACAGTTTGAGGTCTTATATTCTCACACACAGATTATATGCTAATTATAACCTGTTATGCTCCATTATGCCAGGTTTTTGCAGAAATACATTTAAATAAAACATGCTGGTCTCATGATAGTAGGTTTCACTGGCTAAGAAAAATTTTAAATACATTTTTAAAAGTGATTTATAAAATTACTTATCATCTACATTCTAAATTTAAACATGAATGTCTGCTTACTCCTTTCTCCTGGCCTACAGCTGCCATTTATTGAGTATTTACTCTGTTCCAAGAACTATACCAAATGTCATATATATGTTTATCTTATTTTATATGACAACTGGATAACCATTTTATGGTTAGAAAATTGAGGCTTAGAAAGGTTAAGGAGGCCGGGCGCAGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGTCGAGGCGGGCAGAGCAGGAAGTCAGGAGATCGAGACCACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCCGGAGAGGCTGAGGCAGGAGAATGGCGCGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCGCTGCACTCCAGCCTGGCCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAGAAAGGAAGGTTAAGGAAAGTTTCTAAGTATCCTACAGCTAGTGAATTAGTGGTAGAACCAGAATTTGAACATTAAAAGCGTGTGCTCTTAACCCAGAACATATACTCTCACCTATTACAGTATGCTACTTAGTTTTTTAACACTCCTTTCAAAACACTGTATCATGGCCCAGTTTCTTTCCTAATTCTTCAAGGAGATAGCCTCAGATGGCCCATTTCCTTTCTTCTTTTCGTGTAGTCTGTTCCTTTTCAAGGCCTAGTTCAAGAAAAACTTAGTTCCCTTGGCCTTCACAGTCTACAGTGTATTTTTTAAATCTTGAAAGGTTACCTTTGATATTTCAGATGAACTTATATTTGAATACACTTCAAAATAAGCCTGCGTTGGGGGAATGGTGTTCAGGTGAGGGCGAGGTTACAGATGAAACAGGGTTGTCCACATGTTGCTGCTTCTTGAAGCTGGATGATGGCTCCGTGGAGGCCCCCTTGTGCTCTTCTGTTTTTGTATGTGCTTGAAATTTTTCATAATAAAAAGTTTAATTGAAAAAATGAACTTACGTATTATGCTCTAAAATAAGGACAAATTGAGCTATAATTTATCTTATACTATAAATACTGTTCTTCAGACTTGTTGGGTTTTTTTTTATTATTTTTTCTCTTGTAG
Seq C2 exon
AGTGGTGGATATGTTCTTGGCTTTAAAATAGATCCTGTGGAAAAACTACAAGAATCAGTTAAGGAAATCAATTCACTTCACAAAGTCTATTCTGCCAGTCCCATATTTGGAGTTGATTATGAGATGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163093-BBS5:NM_152384:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=FE(6.0=100)
A:
NA
C2:
PF072896=DUF1448=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATTCAAAATTTGGTTTAGCTCT
R:
TTTTCTTCCATCTCATAATCAACTCC
Band lengths:
182-1978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)