BtaINT0025647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001610 | BEB3
Description
Bos taurus solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) (SLC4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_181036]
Coordinates
chr19:44693472-44693915:-
Coord C1 exon
chr19:44693746-44693915
Coord A exon
chr19:44693649-44693745
Coord C2 exon
chr19:44693472-44693648
Length
97 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGC
5' ss Score
8.18
3' ss Seq
ACCCCAGCCTCTGCCCACAGGTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
GCGTTTCCATCCTCATGGGACCCGTCCTCCGCCACATCCCCCTGGCGGTGCTCTTCGGCATCTTCCTCTACATGGGGGTCACATCCCTCAGTGGCATCCAGTTGTTTGACCGCGTCTTGCTTTTGTTGAAGCCGCGCAAGTACTATCCAGAAGTGCCCTACGCCAGGAGG
Seq A exon
GTACGCAGCTGTCTTGGATGCCCAGGTTGGGGTGGGGTGGGGTGGGGGGTCTGGGTGCCCAGGCCGGGCAGGCGATGACCCCAGCCTCTGCCCACAG
Seq C2 exon
GTGAAAACCTGGCGCATGCACTTGTTCACGATCACCCAGATTGTCTGCCTGGTGGTGCTGTGGGTAGTGAGGAGCATCAAACAAATCTCACTGGCCCTCCCCTTCATCCTCATCCTCACGGTGCCCCTACGCCGCTTCCTGCTACCATTCATTTTCCGGGACATGGAGCTCAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001610:ENSBTAT00000002116:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=PD(3.9=18.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTTCGGCATCTTCCTC
R:
GGCAGACAATCTGGGTGATCG
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]