GgaINT0050316 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23589775-23590260:-
Coord C1 exon
chr7:23590091-23590260
Coord A exon
chr7:23589949-23590090
Coord C2 exon
chr7:23589775-23589948
Length
142 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCTGGATTTACCTCCCTAGGTA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GCCTGTCCATTGTGATGGGGAACATGCTGCGGCAGATCCCGCTGGCTGTGCTCTTTGGCATCTTCCTCTACATGGGGGTTACGTCTCTCACGGGCATCCAGCTCTACGAGCGACTGCTCCTGATCTTCATGCCATCCAAGCACCACCCCGACCACATCTATGTTGTTAAG
Seq A exon
GTGAGTGAAGGCAACCTGCAGGAGAGTGGAGGAGGAAGAGGCAGGCGAGGGAGGATGGTGCCTTCTTGGTGATGCTAGCTTTGATGACCCCTTGGTGATCCATGTGGGAGGATGTGTTCTTAGCCTGGATTTACCTCCCTAG
Seq C2 exon
GTAAAGACATGGAGGATGAATCTCTTCACCTGCATTCAACTGGCCTGCATTGTGCTGCTCTGGGTGGTGAAATCTACAGTGGCATCTCTGGCCTTTCCCTTCGTTCTGATCATGACGGTGCCATTGCGACGCTTCGTGCTGCCCCGCTTCTTCCACGACAGGGAGCTCAAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.0=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGCTCTTTGGCATCTT
R:
GCACCGTCATGATCAGAACGA
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]