BtaINT0026388 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019386 | BOLA-NC
Description
Bos taurus non-classical MHC class I antigen (BOLA-NC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105616]
Coordinates
chr23:28355810-28356303:-
Coord C1 exon
chr23:28356016-28356303
Coord A exon
chr23:28355910-28356015
Coord C2 exon
chr23:28355810-28355909
Length
106 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
3' ss Seq
CTCTTCCCTTGCCTCCACAGAAC
3' ss Score
12.1
Exon sequences
Seq C1 exon
ACCCTCCAAAGGCACATGTGGCCCATCACCCCAGCTCTGAGCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGAGGAGATCTCACTGACCTGGCAACGCAATGGGGAGGACCAGATCCAGGACATGGAGCTTGTGGAAACCAGGCCTTCAGGGGACGGAACCTTCCAGAAGTGGGCGGCCCTGGCGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCGTGTGCAGCACGAGGGGCTTCAGGGGCCCCTCACCCTGAGATGGGGTAAAGGAGGGG
Seq A exon
GTAGGAATGGAGTTTCCTCTCAGATAAAGCAGGAGCCCTTCAGGACTCAGTTCAGCAAGGTCAGGGCTCAAGCCTGAGGTCAGGGCCTCTTCCCTTGCCTCCACAG
Seq C2 exon
AACCTCCTCAGCCCTCTGTCCCCATCATGGGCATCATTCTTGTCCTGGTTCTCCTCGTGGTGGCTGTGGTGGCTAGAGCTGTGATCTGGAGTAAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019386:ENSBTAT00000021451:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=85.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCACTGACCTGGCAACG
R:
ACGAGGAGAACCAGGACAAGA
Band lengths:
258-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]