MmuINT0075564 @ mm9
Intron Retention
Gene
ENSMUSG00000024448 | H2-M10.1
Description
histocompatibility 2, M region locus 10.1 [Source:MGI Symbol;Acc:MGI:1276522]
Coordinates
chr17:36460959-36461463:-
Coord C1 exon
chr17:36461188-36461463
Coord A exon
chr17:36461062-36461187
Coord C2 exon
chr17:36460959-36461061
Length
126 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCCTTCTTTTCCATCCTCAGAGC
3' ss Score
11.18
Exon sequences
Seq C1 exon
ATGCCCCCCAAACACATGTGACCCACCATGTAAGACCTGAAGGGAATGTCACCCTGAGGTGCTGGGCCTTGGGCTTCTACCCAGCTGACATCACCATGACCTGGAAGAGGGATGGGAACAACCTCACCCAGGACATGGAGCTGCCAGACACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTTCCCTCTGGAGAAGAGCTAAGATACACATGTCATGTGCACCATGAAGGGTTACCTGAGCCTCTCACTCTAAAATGGG
Seq A exon
GTAAGGAGTGGGTGTGAGCACACACACTGCTGTCAGGAATTGTGTGAGCTCTTTGATGAACTAGAGCAGGATCAGGGTTGAGAGCTAGGGTCAGACTCCTCACTCTTCCTTCTTTTCCATCCTCAG
Seq C2 exon
AGCCTCCACACACCATCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGGAACCTTGGTGGTGGGAACTGTGGTGATTTTTCTGGTGTGGAGGAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024448-H2-M10.1:NM_013544:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=89.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGACATCACCATGACC
R:
AACCAGGCCGATGAGAATTGC
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: