BtaINT0026715 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7246314-7246975:+
Coord C1 exon
chr23:7246314-7246618
Coord A exon
chr23:7246619-7246852
Coord C2 exon
chr23:7246853-7246975
Length
234 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TGGTTTCTTTTCTTCTCTAGCTA
3' ss Score
9.28
Exon sequences
Seq C1 exon
ACTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTGCTGGCTACGACTCAGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGTTGAGCCTGGACATCAACAAGTTGCCCGGGGAGAAACTGGGTCGCGTTGTGCACATAATCCAAGCCAGGGAGCCCTCTTTACGTGACTCAAACCCAGAAGAAATTGAGATAGATTTTGAAACACTCAAGCCGTCCACACTTAGAGAGCTTGAACGTTACGTTCTTTCCTGCCTGCGAAAGAAACCTCGGAAGCCGTATA
Seq A exon
GTGAGTATGAAATGAGATTCCCAAGTTGCCTTAGCGAATTCTTGTGCGGTTCTGAGGACAATTTAGAGAAGGAGGTGGGGGGGTATGCTTGATGCACTTGGAATCATCAGTTCCTGGGATGATGGGTTGCATTAGTTGCTTCCTTAAGTTCAAGAAAGGCATTTGGCAACAACAGGGGACAGGGAAACCGGAGTGCTCCTGGCTATGTTAGTCCTGGTTTCTTTTCTTCTCTAG
Seq C2 exon
CTATTAAAAAGCCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAACTAGAAAAGCGGTTACAAGATGTTAGTGGGCAGCTCAATTCTACCAAAAAGCCCCCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074:ENSBTAT00000014704:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=PD(13.0=40.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGGCCCATGAGTTACG
R:
CCGCTTTTCTAGTTCCCGCTT
Band lengths:
305-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]