GgaINT0123644 @ galGal3
Intron Retention
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:72758-73268:-
Coord C1 exon
chr16:72964-73268
Coord A exon
chr16:72881-72963
Coord C2 exon
chr16:72758-72880
Length
83 bp
Sequences
Splice sites
5' ss Seq
ATAGCGAGA
5' ss Score
-6.06
3' ss Seq
GCTGAACCTGAATTTCACAGCCA
3' ss Score
2.32
Exon sequences
Seq C1 exon
GAACTCAAAGAAAGCAGCAAAAGCGGCGCTGCCGCCTCCGCCCGCGCTCTACGATTCGGAAGAGGAAGAGGAGAGCAAACCGATGACGTACGATGAGAAGAGGCAGTTGAGCCTGGACATCAACAAACTGCCCGGGGAGAAGCTGGGCCGTGTGGTGCACATCATCCAGTCCCGGGAGCCCTCACTGCGTGATTCCAACCCCGAGGAGATTGAGATCGACTTCGAGACCCTCAAACCCTCCACACTGCGTGAGCTGGAGCGCTACGTGCTGTCCTGCCTGCGGAAGAAACCCCGCAAACCCTATA
Seq A exon
GCGAGAGTGAGTGGGGGGCTGCGTTCAGGGGGCGGCCCTGGGGTGGAGGTGGGATGGTGTGGGGCTGAACCTGAATTTCACAG
Seq C2 exon
CCATGAAGAAGCCGGTGGGGAAGACGAAAGAAGAACTGGCGCTGGAGAAGAAGCGGGAGCTGGAGAAGCGGCTGCAGGACGTCAGCGGGCAGCTCAACTCAGCCAAGAAACCCCCAAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156:ENSGALT00000000212:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCCAACCCCGAGGAGAT
R:
CTTCTTCTCCAGCGCCAGTTC
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]