BtaINT0026723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7245200-7245836:+
Coord C1 exon
chr23:7245200-7245451
Coord A exon
chr23:7245452-7245570
Coord C2 exon
chr23:7245571-7245836
Length
119 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TGTTTCTGTTTTCTCTCAAGCTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATGTATTTGAGTTCCGTTATGCCAAAATGCCAGATGAACCACTGGAACCAGGGCCTTTACCAGTCTCTACTGCCTTGCCCCCTGGCTTGGCCAAGTCATCTTCAGAGTCCTCCAGCGAGGAAAGTAGCAGTGAGAGTTCTTCTGAGGAAGAGGAGGAGGAAGATGAGGACGAGGAGGAGGAGGAAGAAGAAAGTGAGAGCTCTGACTCTGAGGAAGAAAGGGCTCATCGCTTGGCTGAACTACAGGAACAG
Seq A exon
GTACTTTGTTACTGTTGAGTTTACTGGGTGAGGTTCATGCTGTCTTTGGCTTGATTTTTTTTTTTTCCCCATTGCTTTATCTATGTATTTTTTTCAATTTGTTTCTGTTTTCTCTCAAG
Seq C2 exon
CTTAGAGCAGTACATGAACAACTGGCTGCCTTGTCCCAAGGCCCAATATCCAAGCCCAAGCGAAAGAGAGAGAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGCTGATGAAGATGACAAAGGCCCTCGAGCACCCCGCCCGTCTCAGCCCAAGAAGTCCAAGAAGGCGGGTGGCGGTGGGAGCAGTGGCGCTGCTACTCTGGGTCCCCCTGGCTTTGGGCCTTCTGGAGGAGGGGCCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074:ENSBTAT00000014704:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(25.6=100)
A:
NA
C2:
PF090735=BUD22=FE(27.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGAGGAAAGTAGCAGTG
R:
TGCTTCTCTGCCTTCCGTTTC
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]