MmuINT0025659 @ mm9

Intron Retention

Gene

ENSMUSG00000024335 | Brd2

Description

bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]

Coordinates

chr17:34250515-34251122:-

Coord C1 exon

chr17:34250877-34251122

Coord A exon

chr17:34250778-34250876

Coord C2 exon

chr17:34250515-34250777

Length

99 bp

Sequences

Splice sites

5' ss Seq

CAGGTAGAT

5' ss Score

7.25

3' ss Seq

TTCACCTTTTTCCTGTATAGCTT

3' ss Score

9.81

Exon sequences

Seq C1 exon

GATGTGTTTGAGTTTCGCTATGCCAAGATGCCAGATGAGCCACTGGAACCAGGACCTCTACCAGTCTCTACTGCCTTGCCTCCTGGGTTGACCAAATCCTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGTTCCTCTGAGGAAGAGGAGGAGGAGGAAGAAGATGAGGACGAGGAGGAGAGTGAAAGCTCAGACTCTGAGGAGGAAAGGGCTCATCGCCTAGCAGAGCTGCAGGAGCAG

Seq A exon

GTAGATCATTGTGTTGTGCTCTGTAATTGGGTAAGAACTTGGACTAAGTTAAGACCAAGAAACAATTGGGATCAACAATTTCACCTTTTTCCTGTATAG

Seq C2 exon

CTTCGGGCAGTTCATGAACAACTGGCTGCCCTGTCCCAGGGCCCAATATCTAAGCCCAAGCGGAAGAGAGAGAAAAAGGAAAAAAAGAAGAAACGGAAGGCAGAGAAACATCGTGGCCGAATTGGGATCGATGAAGATGATAAGGGGCCTAGGGCACCTCGCCCACCTCAGCCCAAGAAATCTAAGAAAGCAGGTGGTGGGGGTAGCAATGCTACTACACTCAGCCATCCTGGCTTTGGGACTTCCGGAGGAAGTAGCAACAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000024335-Brd2:NM_010238:9

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.875 A=NA C2=1.000

Domain overlap (PFAM):

C1:

PF0043920=Bromodomain=PD(30.2=15.7),PF062846=Cytomega_UL84=FE(71.3=100),PF103374=DUF2422=FE(66.1=100),PF060886=TLP-20=FE(78.8=100),PF0105613=Myc_N=PU(82.0=98.8),PF062137=CobT=PU(86.3=98.8),PF0334410=Daxx=PU(74.1=75.9),PF027249=CDC45=PU(72.5=79.5),PF056426=Sporozoite_P67=FE(72.6=100),PF045468=Sigma70_ner=PU(72.7=77.1),PF0306610=Nucleoplasmin=WD(100=72.3)

A:

NA

C2:

PF090735=BUD22=FE(27.2=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000025193