DreINT0038109 @ danRer10
Intron Retention
Gene
ENSDARG00000022280 | brd2a
Description
bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
Coordinates
chr19:7244529-7245129:+
Coord C1 exon
chr19:7244529-7244762
Coord A exon
chr19:7244763-7244866
Coord C2 exon
chr19:7244867-7245129
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
TCACTCGCTTGTGTGTGCAGTTG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GACGTGTTCGAGTTCCGCTTCGCCAAGATGCCTGACGAGCCCCTGGAGTCTCTCCCACCTGCATCCCTGGGCGGCGGTCTAGGCGGTGACTCCTCCTCTTCCTCCTCCTCTTCCTCCTCGTCCTCAGAGAGTGACGTGAGCAGCGAGAGTGAGAGCGAGAGCAGCCCGAGCTCTGACAGTGAGGAGGAGAGAGCGCATCGCCTGGCCCAGCTTCAGGAACAGGTGTGTACACAG
Seq A exon
GTAGCGGCTGAGCTTTCTTCCAGCACACATGGCTTAATCTGAGCGGTGTGGTGGCCGCGGGTATACAAACGCTCACTGACTCGATCACTCGCTTGTGTGTGCAG
Seq C2 exon
TTGAGGGCCGTTCATGAGCAGCTGGCGGCGCTGTCCTCCACGCCCATCATCAAACCCAAGAAGAAGAAGGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCCGGAGAAGCATAAGCGAAGCAGGAGCGTGATTGAGGATGAGGTGGTCATGCGGCCGGCCAAGATCCCCAAACTCCCCAAGACACCAAAGAGCAGGAGCAACAGCAAAGCGGCGACGTCAACGCAGAGCAAGAAGAGCTCAAACAAGAAGAGCAACAAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022280:ENSDART00000035967:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCGTCCTCAGAGAGTG
R:
TGCTTCGCTTATGCTTCTCCG
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]