DreALTD0004251-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000022280 | brd2a
Description
bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
Coordinates
chr19:7244529-7245129:+
Coord C1 exon
chr19:7244529-7244750
Coord A exon
chr19:7244751-7244762
Coord C2 exon
chr19:7244867-7245129
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
3' ss Seq
TCACTCGCTTGTGTGTGCAGTTG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GACGTGTTCGAGTTCCGCTTCGCCAAGATGCCTGACGAGCCCCTGGAGTCTCTCCCACCTGCATCCCTGGGCGGCGGTCTAGGCGGTGACTCCTCCTCTTCCTCCTCCTCTTCCTCCTCGTCCTCAGAGAGTGACGTGAGCAGCGAGAGTGAGAGCGAGAGCAGCCCGAGCTCTGACAGTGAGGAGGAGAGAGCGCATCGCCTGGCCCAGCTTCAGGAACAG
Seq A exon
GTGTGTACACAG
Seq C2 exon
TTGAGGGCCGTTCATGAGCAGCTGGCGGCGCTGTCCTCCACGCCCATCATCAAACCCAAGAAGAAGAAGGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCCGGAGAAGCATAAGCGAAGCAGGAGCGTGATTGAGGATGAGGTGGTCATGCGGCCGGCCAAGATCCCCAAACTCCCCAAGACACCAAAGAGCAGGAGCAACAGCAAAGCGGCGACGTCAACGCAGAGCAAGAAGAGCTCAAACAAGAAGAGCAACAAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022280-15-16,16-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGAGGAGGAGAGAGCG
R:
CTTGGGTTTGATGATGGGCGT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]