DreALTD0004251-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000022280 | brd2a
Description
bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
Coordinates
chr19:7244529-7245129:+
Coord C1 exon
chr19:7244529-7244750
Coord A exon
NA
Coord C2 exon
chr19:7244867-7245129
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCACTCGCTTGTGTGTGCAGTTG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GACGTGTTCGAGTTCCGCTTCGCCAAGATGCCTGACGAGCCCCTGGAGTCTCTCCCACCTGCATCCCTGGGCGGCGGTCTAGGCGGTGACTCCTCCTCTTCCTCCTCCTCTTCCTCCTCGTCCTCAGAGAGTGACGTGAGCAGCGAGAGTGAGAGCGAGAGCAGCCCGAGCTCTGACAGTGAGGAGGAGAGAGCGCATCGCCTGGCCCAGCTTCAGGAACAG
Seq A exon
NA
Seq C2 exon
TTGAGGGCCGTTCATGAGCAGCTGGCGGCGCTGTCCTCCACGCCCATCATCAAACCCAAGAAGAAGAAGGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCCGGAGAAGCATAAGCGAAGCAGGAGCGTGATTGAGGATGAGGTGGTCATGCGGCCGGCCAAGATCCCCAAACTCCCCAAGACACCAAAGAGCAGGAGCAACAGCAAAGCGGCGACGTCAACGCAGAGCAAGAAGAGCTCAAACAAGAAGAGCAACAAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022280-15-16,16-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGAGGAGGAGAGAGCG
R:
CTTGGGTTTGATGATGGGCGT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]