GgaALTD1004385-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:92233-92765:+
Coord C1 exon
chr16:92233-92483
Coord A exon
chr16:92484-92487
Coord C2 exon
chr16:92566-92765
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCCCTGTCTCCCCCCACAGCTG
3' ss Score
13.16
Exon sequences
Seq C1 exon
GATGTCTTTGAGTTCAGCTACGCCAAGATGCCTGATGAGCCGCAGGACGCCAGCCCACCCTCAGTGTCTGCCCCACTGCTTGGAGCCCTCTCCAAATCCTCCTCCGAGGAATCCTCCAGCGATGAGGATGATGAAGATGAAGATGATGAGGATGATGATGAGGATGAGAGCAGTAGTGAGAGCTCATCAGAGAGCGAGGAGAGCTCTGACTCGGAAGAGGAACGTGCCAACCGCCTGGCAGAGCTGCAGGA
Seq A exon
GCAG
Seq C2 exon
CTGCGGGCCGTGCACGAGCAGCTGGCTGCCCTCTCACAGGGCCCCGTTTCCAAACCCAAAAAGAAGCGGGAGAAAAAGAAAAAGAAGAAATCAGAGAAGCACAAAGGGCGAGGAGGAGATGAAGAGAGCCGGGCGCGTCAGGCGCAGCTCCGCAAAGCCAAGAAGGGCGGCGGCGGGGGGAGCGGCGGGGGCAGCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-16-17,17-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF031159=Astro_capsid=FE(47.5=100)
A:
NA
C2:
PF031159=Astro_capsid=PD(33.3=88.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGAACGTGCCAACCG
R:
CCCGCTTCTTTTTGGGTTTGG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]