MmuALTD1010169-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34113570-34114177:-
Coord C1 exon
chr17:34113936-34114177
Coord A exon
chr17:34113932-34113935
Coord C2 exon
chr17:34113570-34113832
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
TTCACCTTTTTCCTGTATAGCTT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GATGTGTTTGAGTTTCGCTATGCCAAGATGCCAGATGAGCCACTGGAACCAGGACCTCTACCAGTCTCTACTGCCTTGCCTCCTGGGTTGACCAAATCCTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGTTCCTCTGAGGAAGAGGAGGAGGAGGAAGAAGATGAGGACGAGGAGGAGAGTGAAAGCTCAGACTCTGAGGAGGAAAGGGCTCATCGCCTAGCAGAGCTGCAGGA
Seq A exon
GCAG
Seq C2 exon
CTTCGGGCAGTTCATGAACAACTGGCTGCCCTGTCCCAGGGCCCAATATCTAAGCCCAAGCGGAAGAGAGAGAAAAAGGAAAAAAAGAAGAAACGGAAGGCAGAGAAACATCGTGGCCGAATTGGGATCGATGAAGATGATAAGGGGCCTAGGGCACCTCGCCCACCTCAGCCCAAGAAATCTAAGAAAGCAGGTGGTGGGGGTAGCAATGCTACTACACTCAGCCATCCTGGCTTTGGGACTTCCGGAGGAAGTAGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335-34-33,35-33-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(30.2=15.7),PF062846=Cytomega_UL84=FE(71.3=100),PF060886=TLP-20=FE(78.8=100),PF0105613=Myc_N=PU(82.0=98.8),PF045468=Sigma70_ner=PU(72.7=77.1)
A:
NA
C2:
PF090735=BUD22=FE(27.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGAGGAGGAAAGGGCTC
R:
TGGGCTTAGATATTGGGCCCT
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types