BtaINT0026724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7245571-7246618:+
Coord C1 exon
chr23:7245571-7245836
Coord A exon
chr23:7245837-7246313
Coord C2 exon
chr23:7246314-7246618
Length
477 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GATAATTTTCTTTTGCTCAGACT
3' ss Score
5.39
Exon sequences
Seq C1 exon
CTTAGAGCAGTACATGAACAACTGGCTGCCTTGTCCCAAGGCCCAATATCCAAGCCCAAGCGAAAGAGAGAGAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGCTGATGAAGATGACAAAGGCCCTCGAGCACCCCGCCCGTCTCAGCCCAAGAAGTCCAAGAAGGCGGGTGGCGGTGGGAGCAGTGGCGCTGCTACTCTGGGTCCCCCTGGCTTTGGGCCTTCTGGAGGAGGGGCCACCAA
Seq A exon
GTGAGTTCTCACAGGGACGGAGGCAGAGATTTCTCCCAGCGCTTGCAGTTTTCTCTAGTGATTTTTTTTTTTTTTTTTCTGGCAAATGTCCAGATGATTAAATAGACCTTGAAGAATATAGGGTCTTTTGAAGCTGCTACCTACCCCTCTCTAAGCCAGAGTCTGTACTTTTTTGTATATTCTTTTTTTCTGTATTCGGGGATGGGTTAGTGCTTTAGGTACAAAAAAAAAAACAGTAGACCTGTGCTGACGTACTTGTATTTATTTTTCAAAGCCCAACTGAGATTAATATAAAATATCTGTTGTGTAAAGAAGCTCTGCTCCCCTGAGGAGCACACATGTGTCCTGTAGCCCATCTCTGACTCACTCATTTGCCTTAATGGAAACAGTTGTTCAGGCAAGAAATCCAGATCACTGGATTAAGTAGAATGTGTTGAGGTAATGCGTTCCCCCAAGTGATAATTTTCTTTTGCTCAG
Seq C2 exon
ACTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTGCTGGCTACGACTCAGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGTTGAGCCTGGACATCAACAAGTTGCCCGGGGAGAAACTGGGTCGCGTTGTGCACATAATCCAAGCCAGGGAGCCCTCTTTACGTGACTCAAACCCAGAAGAAATTGAGATAGATTTTGAAACACTCAAGCCGTCCACACTTAGAGAGCTTGAACGTTACGTTCTTTCCTGCCTGCGAAAGAAACCTCGGAAGCCGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074:ENSBTAT00000014704:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(27.2=100)
A:
NA
C2:
PF090735=BUD22=PD(13.0=40.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGCCCAAGCGAAAGAG
R:
TTGATGTCCAGGCTCAACTGC
Band lengths:
342-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]