GgaINT0123643 @ galGal3
Intron Retention
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:72964-73557:-
Coord C1 exon
chr16:73358-73557
Coord A exon
chr16:73269-73357
Coord C2 exon
chr16:72964-73268
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGGTGCTTTGCTTCCTGCAGGAA
3' ss Score
9.92
Exon sequences
Seq C1 exon
CTGCGGGCCGTGCACGAGCAGCTGGCTGCCCTCTCACAGGGCCCCGTTTCCAAACCCAAAAAGAAGCGGGAGAAAAAGAAAAAGAAGAAATCAGAGAAGCACAAAGGGCGAGGAGGAGATGAAGAGAGCCGGGCGCGTCAGGCGCAGCTCCGCAAAGCCAAGAAGGGCGGCGGCGGGGGGAGCGGCGGGGGCAGCTCCAA
Seq A exon
GTGAGTCTAGGCTGTTTTTTGGGGGATGATGGTCAGCTGTGGGGTGATTCCTGAGGTTCATTTTCCTGATGGTGCTTTGCTTCCTGCAG
Seq C2 exon
GAACTCAAAGAAAGCAGCAAAAGCGGCGCTGCCGCCTCCGCCCGCGCTCTACGATTCGGAAGAGGAAGAGGAGAGCAAACCGATGACGTACGATGAGAAGAGGCAGTTGAGCCTGGACATCAACAAACTGCCCGGGGAGAAGCTGGGCCGTGTGGTGCACATCATCCAGTCCCGGGAGCCCTCACTGCGTGATTCCAACCCCGAGGAGATTGAGATCGACTTCGAGACCCTCAAACCCTCCACACTGCGTGAGCTGGAGCGCTACGTGCTGTCCTGCCTGCGGAAGAAACCCCGCAAACCCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156:ENSGALT00000000212:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.845
Domain overlap (PFAM):
C1:
PF031159=Astro_capsid=PD(34.1=86.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGAGAAGCACAAAGGGCG
R:
CTCTTCCGAATCGTAGAGCGC
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]