BtaINT0026738 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8900682-8901962:+
Coord C1 exon
chr7:8900682-8901063
Coord A exon
chr7:8901064-8901666
Coord C2 exon
chr7:8901667-8901962
Length
603 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGGCTCCCGTCCTTGCAGCTT
3' ss Score
10.42
Exon sequences
Seq C1 exon
CACCACCACCACCACCATCAGCAGATGCAGCAGGCCCCGGCCCCCATGCCCCAGCCCCCGCCGCCGCCGCCGCCCCAGCAGCCCCCGCCGCCGCCGCCGCCACCCCAGCAGCAGCCTCCGCAGCAGCCCCCGGCCCCGCCCCCGCCCCCCTCCATGCCACAGCAGGCGGCCCCCGCGATGAAGTCCTCGCCTCCACCCTTCATCGCCGCCCAGGTGCCTGTGCTGGAGCCCCAGCTTCCAGGCAGTGTCTTCGACCCCATCGGCCACTTCACCCAGCCCATCCTGCACCTGCCACAGCCCGAGCTACCCCCTCACCTGCCCCAGCCTCCTGAGCACAGCACTCCGCCTCATCTCAACCAGCACTCGGTGGTCTCTCCTCCAG
Seq A exon
GTGAGCGGTGACCGTGCCCACTCGGGTCTTAGTACGGTGACGGGCTCCTCTGAGCCACGGGTAGAATCCCTCTTAGCCTCAGCTGTCTGGTTGCTCGGGGTCGATTAGCCGCTCCTTGGGCCCATTCTGGAAATGATGCCAGAAGTGTGGACAGGACAGGCCTTGCGAGGAGAGACCGTGCTTTGGTGCAGAAGATACTGATCCAGGTCTGGTGGGCCAGGCCTCGCAGTGCGAGGTGGGAAAGGATGGGACTACTCTGTGGCTCCCAGTCAGGGGTGGGAGGGCATGAACTCTCATCCTGCAAGGGATGTGGGGATGACGAAAGACCTGGAGGGTGAGTGGAACGGTTGGAGGGGAGGGAGGAAAGTTAGGGGCACAGAGCACAGGGCAGGATGATGCTGGTGGGGGGGTGGGGCGGGGGGGGGCTTCTTCCTGTAGCCCTCCCTGGATGCCATCCTGACTCTCGAGTTCTGGGGAAGCCAAGGAGGGTGGGGAGAGGTTGCCAGTTGAAGGGAGACAAGTCAGAGGGCGGGATGGAGGAGAAAGGCTGGGCCGGGGGCCGCACAGTGTGTGAGCCTCACCACCTGGCTCCCGTCCTTGCAG
Seq C2 exon
CTTTGCACAACGCGCTGCCTCAGCAGCCATCACGGCCCAGTAACCGAGCTGCCGCCTTGCCCCCCAAGGCTTCCCGTCCCCCCACTGTGTCGCCCGCCCTGGCCCAGCCACCCCTCCTCCCGCAGCCCCCCATGGCTCAGCCCCCCCAAGTGCTGCTGCAGGAGGACGAAGAGCCGCCTGCCCCGCCCCTCACCTCCATGCAGATGCAGCTCTACCTGCAGCAGCTGCAGAAGGTGCAGCCCCCCACGCCACTACTCCCTTCCGTGAAGGTGCAGTCGCAGCCCCCGCCCCCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495:ENSBTAT00000003242:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGCAGTGTCTTCGAC
R:
GCATCTGCATGGAGGTGAGG
Band lengths:
355-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]