MmuINT0025676 @ mm9
Intron Retention
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32337947-32339491:-
Coord C1 exon
chr17:32339119-32339491
Coord A exon
chr17:32338538-32339118
Coord C2 exon
chr17:32337947-32338537
Length
581 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGTTTGTTGTTTATTTCAGCTT
3' ss Score
9.72
Exon sequences
Seq C1 exon
CATCATCACCATCACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCCCCACCTCCACAGCAGCCTCCTCCACCCCCACCTCCGCAGCAGCAGCAGCAGCAACCTCCACCCCCACCACCTCCGCCCTCCATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGGAACCACAGCTGCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGGAGCTGCCTCCTCACCTGCCCCAGCCACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAG
Seq A exon
GTGAGCCATGGCTCTCTCTCCTTTTGCCACCTTGGTTCTACTGCATCATCATCAGTGACTTTGAGCATCCTTAGCTTCAGGGATGAGTCGGTTGCTTCTCTGGGATACGACTGATGTGCCAGAAGATTGTAGTTAATTCTTTGGGGCCAGGCATTCTGTTAGATCAGCAGAAATTGGACCTGTCTGCAGCCCTGGGTTAGGGCATGGGAGAGACATCCTCATCCTCATCATTAATCCTGTGGGGTTTGGAGAACATGGATGGAGGGGAAGAGACGGAGAAGTGGGGATGTTTACTCTCTTGGCAAGCTGATGGAAGTCTGTGAGCAGATATCACAGGCCTGAAGGTCTGTGCAGAAAAAAGGAGGGAAGGTCAGGGACACAGAATATAGGGCAGGATGGCTAAGGAAGGCCTGCAGGCCTTCTCAGAGCTGTCTTCTTGTACTGTCTGTAGAAGCTTGCGAACCAGAAGAACAGAAGGTGGACATGATGTCAGGACAAGGTCAGGGTAGACAGAAACGCCAATCCAGAACCAAAGGAACTAAAGCCTCATGTCTATTTTGTTTGTTTGTTGTTTATTTCAG
Seq C2 exon
CTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCAAAGCCTACCCGACCCCCAGCTGTGTCCCCTGCCCTGGCCCAGCCCCCCCTGCTCCCACAACCACCAATGGCTCAGCCCCCCCAAGTGCTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAGCCACCGCCACCCCCACCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCTCATATTCAGCAGCCCCCACCACCCCCAGGACAGCAACCTACTCACCCACCCCCAGGACAGCAGCCCCCACCACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTTCCCCCCGGCACCACAAGTCAGACCCCTACTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002-Brd4:NM_020508:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCACCCAGCCCATCTTG
R:
TCTGCAGCTGCTGTAGGTACA
Band lengths:
346-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: