BtaINT0029101 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18991717-18992058:+
Coord C1 exon
chr7:18991717-18991879
Coord A exon
chr7:18991880-18991987
Coord C2 exon
chr7:18991988-18992058
Length
108 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TCTGTCCCACCACCTCTCAGTCC
3' ss Score
6.86
Exon sequences
Seq C1 exon
ATCCCGGCCAGCAAAGAGTTAAAATCCGACAAGGGGCACAAGTTCGTGACTGTCGTAGCGACCTTCGGGAATGTCCAGGTGGAGAAGGTGGTGCTGATCAGCCTTCAGAGCGGGTACCTCTTCATCCAGACGGACAAGACCATCTACACCCCAGGCTCCACGG
Seq A exon
GTAAGGGGCGGAGAGGGGTGGCTGGAGAGGGCGGGATTGGGGAGGGGCAGGGCTGGGGGAGGAGCAGAGTCTCACCCAACTCTCTTTTTCTGTCCCACCACCTCTCAG
Seq C2 exon
TCCTCTATCGGGTCTTCACTGTTGACCACAAGCTGCTGCCCGTGGGCCAGACGGTTTTCATCACCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280:ENSBTAT00000022979:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.7=29.1)
A:
NA
C2:
PF0183514=A2M_N=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCGGCCAGCAAAGAGTTA
R:
CTCGATGGTGATGAAAACCGT
Band lengths:
234-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]