BtaINT0029305 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112321473-112326723:-
Coord C1 exon
chr8:112326561-112326723
Coord A exon
chr8:112321544-112326560
Coord C2 exon
chr8:112321473-112321543
Length
5017 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
GATATCAATTATTCTTACAGTAA
3' ss Score
4.54
Exon sequences
Seq C1 exon
ATACAACCCAAACAGTTGTCTGAAAGACAAAGCTCCGTTTCACACGTGTATCTGGAAGTTACATCAAAGCATTTTTCAAAAGCAAAAAAAATGCCAGTAACCTACGACAATGGATTCCTCTTCATTCACACAGACAAACCTGTGTACACCCCACACCAGTCAG
Seq A exon
GTAGAGTGTGAGACGCCTCTTTCTCTGGGGAGCAGTGGGACGGGCACTGACACCGTACTGTAGAGCTTTATCCTTCAAGCTGGAGCAACTGGATAATGGATGACGGCATTTGTTTAAACTGAACTCTGGATGTGGGGAAGAATCGTTTATTTTTAATGTTTGTTTTGCATTGGAGTCAAACTGGTTTACAAAGCTGTGTTAGCTTCAGGTGTATAGCCAAGTGATTCATCTGTACATATACATGTATCACATTATTTTCACCTTTAGGTTATTACAGACTGTTGAGCAGAGGTCCCTGGGCCATGCAATAGGTCCTCGCTGGTTATCTATCTAAATACAGCAGCATGAACACGGCCAAGCTCATTCTAGGAGGCCACCAGCGCTGAGATGACAAAAGCAGACAGGGACACCACAAAATAAGATGACAGGCCAGTATCACTGTGAGCTTTAACGCTTGACTTTAAGTGGAGACAGGCTTCCAACTTGATCAAAAGAGTCTCAATCCCCAGTGATTTCTACTTATAAATATAATTTTAATTTTAAATTCATATGGAAATTGTTAAATAATTATATGGAATTTAGTTTTTAAATTTTAAATATAAATCTCAGATTCATATGGAAATCACAAAAGTCAACAAGTACATTATCTACCCTGTCAGTTGTTCCCACGTAGGAAAAAAGCTATTTAAGAATTATGAGATGTAGTGTTAGGTTTTATTATTAAACAAGCTATAAGAGGTAACTGCAAATATAATTTTGGCAATGTGAAAATAATTTGTTATAAAGTAGTGATCATAAAAACATTCTATTACTTTGCAGCTAATTCTCAAATTCAGAAAACAAATCAAAGCCTAGGGTATCAGATGATTCAGCAAAAAGTAAGTGAAGTCACATAAATAAATGGATATTAATTTTCTAAGGAGATCTACCTAAAGAAAGTTCCTATTAGAACACGGGTTTGTATTAGTGGTTTATCTGTTAGAGGGGGAAAGGACAGGGTAGCCCATCAAACCTCTGATTGGTGAGTGGCTGGATTTACTCCCAGTGAACGAAAAACAAAACACAGAAAAGTGTGAATGCTGCCCACATATGTTCACGTATCTGCAAAATCTTCAATTCCTCCATCACTCCCTGTTGCCAAAATTAACTTTTGAGCAAATCAGGATGGAATTATAAGAGTACATGGAAGGGGGAGGTTCCGGAGTTTCAATAATGGCATTATTGGTGAAGGAAAGAGGACGAGAGGCCAGACCAGCCAGTTTTGTTGAAAACCTTTCAGGTAGCACATGCTTGCTACATGTTGACTGATGCTGATGACAGAATGGAGTGGAATGGGCCTGCACCATTGCCTTTTCAGCAGGATCTCCTGTCATGACCAGCTCAGAAAGAAAAGGCCTAGAAAGGTTGGGGTATCGCTTCCAGCTTGGACATAATATCGTTGCCAGAATAGCATCCTATTGACTCCAAGAAGATGACTTGGTGTTCATTGAGATAGTCTCTGCCCATAAAGTTTGAGCCCTTTTTAAACATCATACCTTGAAACAAATATACCCTCACCCTTGCCCTGTTCCCATATTAGAGGATGCTTCTTTAATTGGGTCTTGTTGACACTACTTACCGTTTAGGGTTCTCATCTTTCTTTTTCTTGTTTAATTTTTGGCTGTGCCCCGTGGCATGCAGGACATTAGTTCCCTGACCAGGGATTGAACCTGTGCCCCTTGCAATGGAAGCATGCAGTCTTAACCACTGCCCTCCAGGCAAGTCCCTAGGGTCCTCATCTTTGTCCATCAAGCAGCCTGATACCCAGACCCTGGGACTTCTGTTAGCTCTCAAGTTTTCCCTTAAGAACAGCCCCATTTATTATTTCTTTATCAGAACTTTACCATAAAAATATGTAGTGTCTTCATCTTAGAATGGAGAAGGAAATGACAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCAGTCTATGGGGTCGCAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCATCTTAGAATAGAGATGAGAGATCTCTAAGATCTCTCTAAGACCTATTCTATCTTAGAATAGATCATACAGAAAACCAGAGCACCTCCCTCTAAATTTTGACTCATTAATGAGAGGTAGTGAAATATAGTTGTGAACAGCAGACTCAGGAGCCAAATTGTCTGGGTTCAAATCACAGTTGGGGCTCTTATTAGCTCCATGACCTTGTGTGAGTTAATCTTTCTGAGTCCCGTTTTCCTCATCTGTATAGTGGAGATAGTAACGGAACTTACCTCTCAGAGTTGTGAGAGTTTGGTGAATTCATATGTATAAAGCACTTCAAACACTGCCTACCCCAGAGTAAGCATCAGGAAAGTATTTTCCATTATCATTTAATCTATGGAATAGCACAAAGCCTTATTAACACAGAAGAAAAAAGAATTACTGAAAAGTAATTCTTTTAGAAATTAATTACATCTTGCTATTTATAGCTCTAATGTCCCAGTCCTCACATTTTAATCTGAAGATCCTGGAGGGATTTTTCATATAAGTATCTTTAGGATAGAGGCTTAGATCTTCAAGGCTTTACAGGATGAAGGATTTTAGAATATTGACCAAAATGCTTCCAGTTTCACACAGCCTGTGTCCTGCCCGCCCCTCCTGCCTCATCACCCACCGTGCCGGCTCTCGTCTGTGGACAGCAGCCAATCCGATGTCTGTACAGTTGCTTTCTTGCACCGTTTTCCCATCCGTAGTAAGGCCTGTGAGCCTCTCCCCGGAACATTCATCGCCTTCCTCGCCCTCTGAACTTCCACTCACCTCTTCCGTGCCATCACACAGAGGGCAGCCTTCTCTGCATCAAAGCTCCCTCTGTCGGCCTCAGAAAGCCGGGCAGTGTCCTTGGCAGCATTTCCCACCCCTGGAAGTTTACAGTTGTGGGATCTTGTGTTTGCCTCTCTACTCCACTCCATTAGAGGAATTCCACATTGATTTGCCACCATCATATCTCGGTGCCTAGCATAGTGTCTGCACGTAGAAGGCATTCAATATCTATTTTAAACGTCTATAAGCTATACCTTTGGTACAAAAAGCATTTATTGAACTTGCCTTTGGTATACCGTCGCTATGAAGACAAGATTAATTTTCTAACCTAGCACAAACTGAGTTAGGAAGTGGACAAGTAGCTATAGAAATAATAAAAATAAAATAAAAATAATAAGCATTCATGGTTCGTTGTTATGCGCTGGGTTATGCAAAGCTTTGTCTCATTTAGTCTCGCGTGCCATGAAGCAGATACTAGCAGTCCTGTGTTACAGATGTGGGGCCGAAGGGGTAAGAGGGATTAAGTATCCTGTTCTGGGTCACGTTGGAAAGTGGCAGAGATAGAAATGAAACCAAAGTTTTGAATTTTAGGGCCCAAACTCTTAACTTTTGCGGCACACTGCCTCTGGCAGCAGCTCAATGATGCTCAGGGCTGGACCAGGTATGTTCATAAGGCAGGAGAGGGGACTCGAGCTGAGAGACAGGCGTGAGGGGACAGCAGGGCAGAGGGATTTACTGAGCATTTCATTTTGATCTTATGGTCTTAGTGAAATCAATTTTAGAGAGCTTAATATGTGGCTTCTTAGGTAGAGCTTTGCATAATACTGACCCTTTAAAGGTTTATGACGTCTGTCTACAAACGTTTAACCGTTTGTGGTTAAAGTTTTGGCCATGAAATGATTTGAGCATCAGAAAAACCCTAGAGAAATTATAATATGTCATTGGAAGGAATTAAACCAGCGTGTTCAAGCAGCTAAGAGTTAAAAGCTAAGCAGACGTATTCGTTTAAAAGGTGGGGATCTGACAGGAAGAAGTGGAAGGGAACTAATTGTTACTGAGCTCCCTGCCATTATTCTTTTAACAACGAAGGAATAATTGTAGGATCTGGCTCAATAAATGTAACAAAACTGTACAATTCAAAACTATCCTTAGCAACAGTAAGAGACAATTTGGGGCCTTGTTGTAAGAGTGTATAGTCTGAAACAAACCACCTAATTTTTCATTAAAATCTTCAATTCTGAGATGATTTATTATACTCCCAGTATAACCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGATAGTAAAGAATCGGACTGCAGTGCAGGAGACCTGGGTTCGATCCCAGGTTGGGTGGAAAGATCCCCTGGAGGAGCGCATGGCAACCCGCTCCAGTATTCTTGCCTGGAGAATCCTCGTGGACAGAGGAGCCTGATGGGCTACAGTCCATGGGGTCGCAGGAGTCAGACATGACTGAGTGACTAAGCTCAATATAACCATAGGTAGACATCACTATTTTGCTACTATGAAATTTTTTATAAATACTGGCCTAATTACAGATATAACTAATTTTGTACTATATATTTGTTCCCCCAAAGATATATGCAAATACATTTTAATAAAGTGAACTGTTCTTTAAATTCTTTAAAGAAGAATTTAAAAATCTTTAAAAAATACTTTATATCTTTAATATCTTAAAAAAAATACTTTAAATAGAAGTAGCTCTTTAAAGGAATGCAAAAGGATTCTCTTTAAAAGAAAAAAATTTTAGTGATGTGCTGGGAAAGATTGAGGGCAGGAGGAGAAGGGGACAACAGAGGATGAGGTGGTTGGATGGCATCACCGACTCGATGGACATGAGTTTGAGCAAATTCCGAGAGTTGGTGATGGACAGGGAAGCCTGGTGTGCTGCAGTCCACAGGGTTGAAAAGAGTCGAACATGACTGAGTGACCGAACTGAACTGAACTGAAAAGGATTCTCAATAAAAGAAAAAATTTTTAGTGATGTATTTGTCTACAAGCTAACTTTTTCTTTCTTTTAAATACGAATTTCCATATATGATTATGTATTGAATCTTTAAGATGAGGCTTATCTCTTTTAAGGATGATTATTGCAAATATCAAAATACTGTCGCTTCACAAAGTTATTGATGATATCAATTATTCTTACAG
Seq C2 exon
TAAAGGTTAGAGTTTATTCACTGAATGATGACCTGAAGCCGGCCAAAAGAGAAACGGTCTTAACTTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210:ENSBTAT00000016204:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.8=29.1)
A:
NA
C2:
PF0183514=A2M_N=FE(24.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]