RnoINT0027417 @ rn6
Intron Retention
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14212609-14216798:-
Coord C1 exon
chr3:14216636-14216798
Coord A exon
chr3:14212680-14216635
Coord C2 exon
chr3:14212609-14212679
Length
3956 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
ATGCCACATGTTTTTTGCAGTAA
3' ss Score
5.87
Exon sequences
Seq C1 exon
TTACCGCCCAAACAATTTCCCAGAGATGAAAACCCAGTCTCTCACGTGTATCTGGAAGTTGTGTCAATGCACTTTTCGAAATCGAAGAAAATACCAATAACCTATGACAATGGATTTCTCTTCATCCATACAGACAAACCTGTTTACACTCCAGACCAGTCAG
Seq A exon
GTAGAGTATAAATCGTGTGTGTGTTTGTGTTTGTGTGTGTGTGTGTGTGTGAGTATGTGTGAAAATTGACATTGCATTTTTAGACCTTTTGGACACGTGAAATTGAGTGGAGAAAGGTTTCTACCCCTGACTCCCACATCAAAAACAGTCCTTAGTCCCTAGTTGCTTTTATATTTTCAAATAGCACTGTGGGTTTTTATTTATAGAGAAATTTCTAAACAGAGTGAAAAATCAAAAAGTACATTTACTGCCGCACCCAACCTCAACCAGCAAGGAAGACACGACCACAGGAGATCTTCTTCAAGCAGTTTTACTCAGGAACCTTTATACAATCTTCTGACCTCTATCTCTTCTGACTCTCTCTCCTTCTCTGACTCTCTCTCTTCTGACTCCCTCTCCCTCTTCTGACTCTTTCCTTCTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTCTGACTCTCTCCCTTCTCTCTCTTCTGTCTTTCTCTCCATTCTGACTCTCTCTCTTGACTGTCTCTCTACCCGGGGAACACCCTGCACCACACTTAAATAGCTAGCACTGGCCAGTCCTAGCGAGCCACGTGGGTCATGTAGATAGGCTGTCACTATGTGGAAGCTAGTGGGCCAGGCAGACATAGCCAAATAAGGACTTGTTTACTGCAAGGAGCGCTCACCGCTCACCGTTGGGAGGGTGGAAGGCGGAAACCAGCGCCATCTTTGAGGTGCGGCACGTCGCAGCTCTCTACAATTTACCACATTATCAGTTATTTCTAAGGAGATAAAAATCCTCCTTGCAGGCTGCTGGTGGTGCACACATATTTAATCCCAGCACTGGAGAGGCAGAGGCAGGTGGATCTCTCCGAGTTCAAGGACAGCCTGCGGGGTTGGGGATTTACCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAGGAAAAAAAAAAAAGGAAAAAAAAAAGGACAGCCTGGTCTACTGAGCTAGTTCTAGGTCAGCCAGGGCTACACAAAGAAACCCTGTCGGGAGCGCGGTGGGGGGCACTTCCTAAGCATTACTCATTAACAAATGGATTTTATTGCAAATAAAATTTTAACAAAAATATGAACTGTGTTTATAAAAAATGGGGAGAAAAAAACCCACCCAGCCTGGGGAAATTAGATGTTTCAGAAGAGACAGGCAAGATCATGAGAATGTGTGAGTGTTAATATTCAAAGGCTATTTATCAATGAGAATATCAGTTAAAACAGTGCCATAAGTCATAAATCTTCTGGTACAGAGGGAAGGGGGAGTAACCAGCCTAAACCCTGTGGTTGAGGAAAGCCCTGATTTACACAGGAAAGTATAGATGCTTCTCCTCATGTTCGCGTGTTTACAAAATCAATTCCTTCGTCTCTCCTTGCACATCAAGGGTGCTCTATGAGAGACGTGTATATGGAAGGAGGAAGCAATGAGAGTCCGTTAATAAGATTGTTGTTGGGGAAGGACAGAGAAAGGAAGGCAGGATCCGAGTGCTGCACTGTAAAGCCACCACGTGATGTGCTAATGTTGATGGTTCTGGATGACGTCAGCGGTGACGTGATACAGCTCTTGCTATGATTGGCTCAGGCAGGAAAAGTCTGGAGAGGATGAGGATGTCGTTTACCAAAATAGTATGAGCTCTTGACTGGCAAAAGACAACTGAGGACTAGGGAGATGGCTCAGCAGTTAAGAATACTGCCATTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAGAACCAAAAAAAAAAAAAAAAGAATACTGCCATTAATAAACCCAGGTTTGATTACGCACAGCTCACAATTTCTGTAAGTCTGGTCCCAGAGGAATCTACCGTCCTCTTCTGGCCTCTGAAGGCACTGCATACATCGTACACAACTCCCAGACACACAAACTTTTTTAGAGTTGAGGGGAGGGGAAAGATGATGATTTTTTTTTGAAAAGGAAAATCTACAGTCTCATTTCAACCCAATTATACACAAAATTAAGAATAACCTCACCTTCCCCTCCTATCACAGAGGATGCATCCTGGAATGGGTGCCATCTACACTACCCACCACTCAGGGTCATCACTCTTGTATAGCAGGTATGTAGTCTAGAGCCCAAATCCCAGGACCTTTCTTGATTTTTAAGGCTTCCTTTGGGAATGACCTCGTGTTTTCCCATCATAACTTGACTGATAAGAAAATCTGGTGTCCTTACTTACTCTAGTTAACAAGATAACTTCTTATAAATATTTTTCTGTTGATGACAGATAGCAAAATAGAGTAGTTAAAAAACAGACTCTGGCGCCTGTTTTGGTATAATTAAAAAAAGGTTTCTTTTATCCCACACCAGGGCTGGCACCGTAGGACCACATGACATCTGTTACATATTTTCATCTCAGTCAACAAAGCATCTCACCCACTAATCTCCATCCCATATCACACTGCCAATGGCTACTCTCTGAAACCAGAAGCAATCTCTAGTTCCCAAGGCAGGTTGCCACCACGCCAGGCATACACATCCCAATTCCGTGATGGGCCCGGTTTGTCCTGCCACCACTCACTCTCTTGACCTCAAGTCACCATGTGAAAGAACACGTCACGCAAGAACCTCAGATCCAATTGATAAGATATAATTGCCCATCTAAACAGCACAAAATTCTGTACACATCCATCCATTAAGAATATTGATAACAACTTGTAAATGTACAGAGAGAAATCTTAACATCCCCTGCCACGTTCTCTCGGCTGCTCCCTCTCTCTGGCTCCGGTCTCCTCCTCTCTCTAAAACTTTTCTCCCGCCTATCCTTCCTTCTCATCCAATGACAGGCCTCATTCTATGCCTTCACCTGCATAATGACATCAACCTACAGGTGCCATTTTAATCGGGGTCAGATCCAAGCATGAGTGTTTGTTGACTATGTAGTAGCCTGTGAATTAGCCTCTCACAGCCCGTCTTCTTTTTCTGGGGAAAAAAAAAGATAATACACTTTGCTTCATGGAGTTGTACCAATATTGATATAGGTGGGTCATGTCCATAATGGGAGGGGTAACAGCCCTGGGCAAACAGCCCTGAATTTATTAAAAAGGCTAAGCAAGCCAGAAAGAACAAGCCAGTAAGCAGGGTTCCTCCATAGCCCCCAGTTCAGTCCTTGCCTCCAGGCCTCTCCCTTGAGCTCCTTCTCCTTCAGGGATGGAGTATCACCTGAGAGCTGTGAGCTGAAACAAATCCTTTCTCCTCCAACTTGCTTTCAGTCAGAGTGTTTTAGTCCCACTGGATTTTGTAAGTAGAAAAAACATATACTGTCTGGATCAAACTGCCCATTTACTGCTACTCTGATAAAAACACCTCATACTCCCATCTAACCACATGGTAGCTACTTGGTAAACAGTCACAGATACAAGTTATTTACATCAAGGATGTGTTCCCAAAGGCCATTTGCAAACGTATGTAACACAGTGAACCGTATGTTAAATTCAATACAAGTAGTCCCTTACATGAATCCGAAGGGTCTCTTTTTTTAAATATACATTTTCATTTATGGATTGTGAATACAGCCTTTCAAATGAGAGTTTCTCATTAAGGACTGTAAAATTAAATATATATACATACATACTGGGCCTGGTGGCCTAAGCCTGCAATCCCAGCTATGTGAGAGGCTGAGGCAGGAGGATTATGAGTTCAAGGCCACCCTGGGCTTCAGGGTGAGTTCAAAGCCAGGCTAACAAACTAAATGAAACCCTGACTGAAAAGTTAAAGTGGAAAGATGGAGTAAATAAACGAATGAAAGATAGAAACTGTGCCTGCTAGTTTCTGATGATGCCACATGTTTTTTGCAG
Seq C2 exon
TAAAGATTAGAGTCTACTCTCTGAGTGACGACTTGAAGCCAGCCAAACGGGAGACTGTCTTAACTTTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899:ENSRNOT00000025534:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.8=29.1)
A:
NA
C2:
PF0183514=A2M_N=FE(24.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]