BtaINT0029320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112240809-112245198:-
Coord C1 exon
chr8:112245115-112245198
Coord A exon
chr8:112240948-112245114
Coord C2 exon
chr8:112240809-112240947
Length
4167 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CCTTGCTGTGTGTCTCTCAGGAG
3' ss Score
9.99
Exon sequences
Seq C1 exon
CTTATAAAGTTGAGATCGTAGCTGTCACTGAAGAAAATGCTTTTGTTAAGTACACGGCAACTCTCCTGGATATCTACAAAGCTG
Seq A exon
GTAAGAATTCATTCATTAGTTCTTTCGTTCAACAAATATTTGGTCCTTACTATGTGGCAGGCATTATATTAGACACAAAGGATATAGCTTGAATAACACAGCCAGAGCTCCTGCCTTCATAAAGTTTATATTCTATTCGAGGAGACACATTTTTTTTAAAAAGGAAATGGACAAAATAAACAATCAGAAAGTATAAGTGCTGTATTTGAAACAGACATGAGTTAATAAGGGAAATACCTTCAGAGTAATAACAGATGGCATCTTTTAGGAAATGCTATTAAGAGTTAGCTATTCTTAAAGGCGAGAGTAGAGGGAATCAGATGGGCAGGAGCTGGGTCGTACCAGGGTTTATAAGGCAAGGTGAGAAATTTGGATTTTATTCTAGAAGTTCAAAGGGTAGCTAATAAATGGTTCTAGGTGGGCAAGGAACGTTTTCTGAAGATGAGGTATCCTGTCATGTTAATTTTGTCCCTGTCATGATTAAATAAATAAATAAATAAATAAAAATCATTCTGGCTGCAATTGAAGGGAGCAAGAGTTGGAAGAGGAAAACCAGTTAGGAGCATCTATGAAGTGCAGAGCCTTGGCTCAGAGGCCACATGAGTCTTGATAGGCTAAATGAGCTCTAGTAACCAATACAATAAAATGAATTCATATGGAAATAGCACATAAAACAATGGTTTAAAATATGTTCCCTTTTATTCCCTAAGTAAGATGACCTACAAATATTATTAAATTGCTTGTCAAATGATGTAAATGGTAAAAACAAATGATTCATTAAATCATATTTAACTCCAAATAAGTTTTTGTTGGTTTGTTTGTTTTATTTAGAAATTGTCATTTTGTTTGACTCACTGTAGGGGGCCTCTGTTTGAGCTTTGATTTGGCAACAAGAAACCACATCAAATTTTTCCAGTTATGTCTCTACTGAATTGATAGTCATTACATGACATCTAGCTTCAAAAAGTACTTTCTGCTAACAGCGACAGTATTGTGCAAAGTACAGAACCCTTTCTCAGTTCTGCTAAACTAGCAGTACTTACATTCAAATGTTTCTCATCTTTATGATACCACCTAACATTTCCAGGTATTTAATATCGATTATCAGCTAAATTATAAAAACAATTTATTGAAATGTCATGTTTAATTTTCCTAATTTTCTTAATTTTTATTCCCCTTCAACCCTCAGAGTTTTACAAAACATACTTGATGAAGTTTCAGGATTCACGTTTTAAAAACCTTAAAAGTTCATCCATTTTTGCTTTTGTCACTAAAAACAAAAACACTTTCATACAATCAGCTTTTCTGTTGATATTTTGTTTTATGTCAAATGGCATACCATTCTTCACTTTGTAACAACTCTTGCTTTATTTTCATATTTCCTTTACTTATTTTTATATGATCAGTTTTGCCATTCATTAATCTTTCAGCTTATTAAGGCTGAAATATTTTGTCTTGAATATCTAAATATTGACATAATTGCTAGAATATCATACACAAATCACTAATGTATATATATGTATGTGTGTATATTTGTATATATATACACACTTTCTAAGTGTTTACTCCTGTGTCTGTGACTGTCAGACGATGTGGTTTATAAACTCTTTCTAAGTGTTTACTCCTGTGTCTGTGACTGTCAGACGATGTGGTTTATAAACTACCGTTGCAGTTTTAGCACTATTGGCTGCCTTTCAAAATGCCAGTATTTTTCCAATTTTTATTATTGCAATTTTTGAAGTCTCCACACTATTTCTTTATTCCGTCTAGTGTATATTAGGTATATGGTAGTAAATATCAAATTTATGAAAACAATATTTAAAGTGATTCTTGTTTGCCTTGTTTCTTTCATCGCATTATCCGGAGATGCTTGACTCAGAAGGTGCCAAACTGAAACAGCTGTAAATTTCAGGATTTTTGCTAAAGTCCCAGATTTCTCCCTGACATTACATTTGCACCAATAAGGTGTTCTTATAAATATTTCTCATTGACACCTTTTTTCTCAGTTTGATATGTTGTCCTTTCTGTGCTTTGAGTTCAACAAAACCCATGAAGCCATCTTCAGAGCCTCTAATTTTTTAAGTTATTTAAAACATGTTTTATATTCAATAGTTGATTTTCTAGGAAATGATTGAACTTTTACTACCTCATGTATATTTCTCAAAAGCTGTGTTCTCATTTCAGCAGGTAAGAAATTCTGCTGTAAGTGGGGCCCTAACTCTAAGCCGTGGCGCTTGGCTCATTCCTTTTTTCCTTTTGAAATGCTATCAAGTATTTCAAATCTGAAAGTGTTTATTTTTAATCATACACTAGAGTTTAAAATTCTAGTAATACTTTCCAAATTTTTCTTTGCTTGATCGACACTCTGACAGTTTTTTCTGACTTTTACTATTCCAAATGTTTCACTGTGTGAAGTTGATTTGTGATGGTGGCTCACTGATGATCACAAGTGTTCTTTATTTGTAACGTGATTTTGCCATTTTGACAAAATAGGTAAGCACGCTTAGCACTCTGATCTTTTCACAACCCAATTTTCAAGCACTTTTGCAACCGACATACGTATCATAAGCAATAAGACATTCCTATTTTTACCAAAATAATCAAGTTCTTTTCATTCCAGAAATACAAATTACTTATTTTGTATCAATTATCGCCTAGTATCAAAAGATATTCCAGACTGTTCTGAACTTCGTGCAGAATCATGATTCCCAAGCTGTAGTTCTTTATCGCTATCATTTCTTCTCTGTTCTGTCCGTTCAGAAGACTCATGTTTATGACATTTAAAAGGAAATGTTAAGAAAGTTTTGCATAGTTTGTTATCTTTTCATTCTGGCTCTTCATTTTTAACATATATAGATTTTTAATTTATATAAAATAGCAAAACACCACACATTTACCACTTACACAAGAAGTCCTGCTAAAAAGAAGCCAAAATAAGAACTAAACTACTTTGAATCAAGGGCAACTATGTAGTTCAAGGATAATGATGTTATTATCCTGTGACCAGTGTTTCTCCTAAAACACAGGTGAGGATATAAATGAAAAAAAGATGAGTGATTGTTGAAACTGAGGTTAATTATTCTCCCTTCTGAATATGCTTGACATTTTCCATAACAAAAGGTTTTTAAAAATAATAAGACGCCCCACAGTAACACAGCTTACCGTGACAGGGGCTGACTTGGCAGATAGTGCTGGGAAGCTTGCTTGAATGTTGCTGCAGTGGGAAGTCATGTATGCAGGGTCCCCAGCAGAGCCTCAGAACATTAGCTTGAACTAATGTGGGTACACTGTAATTTATTTTACTAATTAAAGTTTACCACTCGTGCAGTTTCTATTATGTGCTATTTAGCAACAGTTTCAGAAGTTTTTCAGGATTTAATAATTAGGATGACTCAGCCAGAGTTTAATAACTGGATACCAGTCCTGAATATATAGCAATGAATGCCCTGGCCTGGCCTCAAGAAGTTTCCAGCCTAGCAGAGAAGTCAGGCATGTGGAGGGAAACATGACGATAGAAACTCAAGTGTAATGGGGATGAGGAGAAAATATGTACTTAGGACACAGAGCATCAGGGAATATTTCCTGAATACTGGGAGGATTGAAGACGTCTTTAGAGGTGGCTGAAAGAAAGAAAGTGAAAATCGCTCAGTCGTGTCTGACTTTTTGCGACCCCATGGAATAGTTCATGGGATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCGTTCCCTTCCCCAGGGGATCTTCTCAAGCCAGGGATCAAACCCAGATCTACCACATTGCAGGCGGGTTCTTTACCAGCTGAGCCACTAGGGAAGCCCCTCAACTCTGGAAAGGTTCTGCTAATTCCTGGTTCCAATGAAATAATGACAAGCACTTTAATAAACCTCACAGCAGTTCTGCAGGGTAGGTTTTACTGTGAAGCCCATTTTGGGGATGAAGAATCTGAGCCTCATTTGTTCAGGTACACAGCTAGGAAGTGGCAGAGCCGGGGTTTAGCTTGGGGAGCCTGATCCCAGAGTCTGAAGTCTTAACCACAGGGACAGTGCCAATAGCCATTAGCCTGTTGATGGAAATTTACACTGAATAATGAATAGCCACGAGGAACAGGAATGCTCAAATGAGTTGAAAACTGTGACATGTGATAACCTTGCTGTGTGTCTCTCAG
Seq C2 exon
GAGAAGCTGCTGCTGAGAGAGACGCTGAAATCACCTTCATTAAAAAGACAAGCTGCTCCAACGCCAATCTGGAAAAAAGAAAACAGTACTTAATCATGGGTAAAGAGGCCCTGCAGATAAAACACAACTTCCGTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210:ENSBTAT00000016204:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=FE(25.5=100)
A:
NA
C2:
PF0175916=NTR=FE(41.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]