HsaINT0024238 @ hg38
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:120953730-120957368:-
Coord C1 exon
chr9:120957285-120957368
Coord A exon
chr9:120953869-120957284
Coord C2 exon
chr9:120953730-120953868
Length
3416 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTGACTTGCATGTCTCTCAGGGG
3' ss Score
7.73
Exon sequences
Seq C1 exon
CTTATAAAGTTAGCATCACATCCATCACTGTAGAAAATGTTTTTGTCAAGTACAAGGCAACCCTTCTGGATATCTACAAAACTG
Seq A exon
GTGAGAATTCATTCGTTCATTCGTTCCTTCATTCAGCAACTATTTAGTACTGACTATGTGCCAGGCATTATATTAAACACAGAAGATACAACTCAAATAAGACAGAGCTCTTGCCTTTTTAAAGCTTATATTCTACTTGGGGAGAAACATTTTTTAAAGATGTTCGTATAAATATTTCTCATTGAATTCATTTTTCTAAAACTTCAGCAAAATGTTTTTTTCAATTGCGTAATTGTCCAATTTCTTTTTCTTTACAACTTTTATTTTAGGTTCAGGGGATACGTGTGCAAATTTGCTACATGGGTAAATTGCATGTTTTGGGGGTTTGGTATATAGATCATTTTGTCACCCAGGTAATAAGCATAGTACCCAATAGGTAATTTTTCAATCCTCACCCTCTACCCTCAAGTAGGCTCTGCTGTCTAGTGTTCCCTTCTTTGTGTCCATGTGTACTCACTGTTTAGTTCCCACTTATAAGTGAAAATATGTGATATTTGGTTTTCTGTTACTGTGTTAATTCACTTAGGATAGTGGCTTTATTTCTGGGTGCTGTAACCTGTTCCATTGGTCTACGTGTCTTTTTTTGTATCAGTAACATGTTGCTTTGGTTACTGTAGCCTTGTAATATAGTTTGAAATCAGGTAGTAGGAGGCATCTAGCTTTGTTCTTTTTGCTTAGAATTCCTTTGGCTATTCAAGTTCTTTCTTTGTTCCATATGAATATTAAAATGTTTTTTTCTAATTTTATGAAAAATGATAGGAATAGCATTAAATCTGTAAATTGCTTTGGACAGTATGGCCATTTTAACAATATTAATTCTTCCTATCCATGAGCGTGGAATGTTTTTCCATTTGTTTGTGTCATCTCTGATTTCTTTGAGCAGTGTTTTGTAATTCTCATTGTAGAGATCATTCACCTCCCTAGTTAGCTGTATTCCTAGGCATTTTTGTGTGTGTGTGGCTATTGTGAATGGGATTACATTTTTTTTTTTGAAATGACGTTTCACTCTGTCACCCAGGCTGGAGCGCAGTGGCACGATCTTGGCTCACTGCAAACTCTGTTTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACATGCACCACCACGCCTGACTTATTTTTGTATCTTAGCGGAGATGGGGTCTTACATGTTGGCCAGGCTGGTCCTGAACTCCTAGGCTCAAGTGATCCACTCGCCTCAGCCTCCTGAAATGCTGGGATTACGTGTGTGAGCCACCGTGCCTGGCCTCATTTCGATTGATATAAATTTTGCAATAAGTAGGACCATAAAGCTAAATTGCAATAATATGTTTATACTAAATTTTTTTCTCTTTTGAAATTCTATCAAATATTTCAAGTCCTAAAATGCTTGATTTTTTTTCTTTTGAGACGGGGTCTCACTATGTTGTTCAGGCTGGTCTCAAACTCCTAGGCTCAAGGGATCCTCTCTCCTCAGCCTCCCAGCTTGATTATTACTAACCATACCCTAGAGTTTAAAATTCTAGTAATATTTTTCAATTTTGTATTTGCTTTATCAACACTTTGATAATTTTTTTTAAATTTTTGTTATTTTGAAAGTTTCATTGTATGAAACTTATTTGTGAAGTTATTTTATTTTTTTCTTCATTGATGGTCACAATTTTTTAATTTGCAGGCTAGTTGCCATTCTAATGAAATAAGTGTTTAGAACTTTGATGTTGCCACAGTCCAACTTTTGAGCAACATTTTCATCCAATGTTCATATTACAAGCAGTAATAAGCCATTCTCTTTTTACTGAAATAACAAAGTGCTTTTCATTCCAGAAATACAAATTATTTGTTTTATTTGATACTGATTCTTGCATAGTATCAAAAGACATTTTAGACTGTTCTGAATTTTTCATAGCATCGGATGGTTCCCAAGCTACAATTTTTTTATTAGTATCATTTCTTCTTTGTTCTCCTGTAGATCCAAAGATGCATTTTATGATATTTAAAAGGAAATGTTAAGAAACATTGGCATACTTCATCTCCTCATTCTGGGCCCATTTTTAACACATAAATTTTGAATTTTTATAAATATAAAAATACCACACACTACTTACAGAAGAATTGTGGCACAGTGACCATAAGCCATTTAGAATCAAGGGCAAACTGTAGTTTGAGGATAAGGATAAATTGGTATTTCTCCAAAGCACAGAGTGCTTAGAATAGGTAAGGATATAGAAGAATAAAAGTTTAGTTATTGTTGAAGCCCAGGGTAGTTGCCTGTTCTCTCTTCTGAATATACTTTAAATTTTCCATGATGAGAAGCTTAAAAAATAATAAGGCCCCACACAGCTACACTGCTTACTATGACAGGGGCTGAAATGGCAGATAGTACTGGTAATGTTGCTCAGATATTGACGTAATAGGAATCTACACCATCAGGGCAGCCTAAGAAATCAGCTTGAACTAATGGGTGTACACTGAAATTTATATCACTAATGAAAGTTTACCATTTACACAGTTTCTATTATACACTATTTGCCAATTGGTTCAGAAGTTTTTCAGGACTTAACAATTAAGATGACTCTGCCAGAACTTAATAGTTAAATATCAGCCCTGTATATATAGCGATAAATCAGACACAGTCCATGCCTTAAGAAGTTTCTAGTCTAGCTAGAAGGACAGATGTGGGACAAAAAATTGTGACAGAAATTCAAGTGTAAAAGAGGTAAAGAGGAGACAGAAAGATATTTAAAACAAAGAGCATCCAGGAATATTTTACTGGATACTGTGAGAATTGAAGGAGACTTTCAAGATAAATGAAATTCAAGAGGCCAACATGGGGAGGAATGCATTCCAGGTAGGGGAACTGGCTACTTGTGAGTTCTTTGAGAATCCCAAAATTACTATCTTTGAAGTTTTCCAAGTCTTTCACATTTTGTACTTTTCCACAAAGTTAACAGTTGCCAAATACCAAATAATTTTATATTTTACTATATAATGTGGAGATTAATGTTGTTCAACTGTAGAGAGGTTCTTTTAATTCTGGTTATATAAGAGTAATAATAAGTACTTACATAGTTCCTACTATGTTCCAGGCACTTTTCATGTATTAACTCATTTAATCTCACGATGGTTCTACAAGGTAGGTTTTATTATCATGCCCAGTCTTAAGATGAGGGTCTAAGGCCTTATACAGATAACATAAATCATTTTCCCAGAGTCACATAGCCAGGAAGCAGCATGCTTAGAGTTTAACCCAGGCAGTCTGGCTCCAGAGACTGAAGCCTTAACCACATGGATATCACGGCTGTCCACTAGCCATGAACCTCTCAATAGCCACGAGGAACCAGAAAACTTGAGAGTTTATAATTGTGACATTAAAACATGAATGGTATAACCTTACTTGACTTGCATGTCTCTCAG
Seq C2 exon
GGGAAGCTGTTGCTGAGAAAGACTCTGAGATTACCTTCATTAAAAAGGTAACCTGTACTAACGCTGAGCTGGTAAAAGGAAGACAGTACTTAATTATGGGTAAAGAAGCCCTCCAGATAAAATACAATTTCAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804:ENST00000223642:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=FE(25.2=100)
A:
NA
C2:
PF0175916=NTR=FE(41.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development