GgaINT0126392 @ galGal4
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8319555-8320340:-
Coord C1 exon
chr17:8320257-8320340
Coord A exon
chr17:8319694-8320256
Coord C2 exon
chr17:8319555-8319693
Length
563 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCTCAACATTCTACTTCAGGTC
3' ss Score
8.08
Exon sequences
Seq C1 exon
TTTACAAAGTGAACATCTTATCTCGCAGTGAAGAAGGTTACTTTGTAAAGTATTCTGCAACTATTCTTGATTTATATAAAAGAG
Seq A exon
GTGAGTGTCGTATTTCTAATCCATCTAAGTATTTTGCTTAGGGCAAGTGCTGTTTGGTTAATGCTGCTGAAGCAGATGACAAAAATCAAGAGTCAAACCTAGTCATTTCAGGAGAGTAAAAAAAACCCTAGCTTCAAATACAGACTTTGAACATTCTTGCCCTAAGAGGGGCAGTGTTTGCATAATGTTTTTAAACAGTTTTTCTTTATTATAGCTGTTAACAGTCCTAAACTGCAATCAGTTAAACATCTCTTTAGTGATAAAATGAGATGGACATATTCCTGCTGTTTTTCACCCTTTTTTTTGTATGAGTTTAATCAATTGGTAAATTGCTATAATTAATAGAAAATTATTTAATTTGTACAAGGTTTATTTACCATTCTATTTCATTTAGAAATAATTTGCAGGAAACGTGTTTTATTTCAACAAATTTTCCTGTTATATAGTAAGTGGCAAATAGCTCACTGTTCCATACCATAACATACCATGTTAGTGTTTTCTAGTACTTGTGTGACAGGAAATTCTTCTTATATACTTTTCAATTTCTCAACATTCTACTTCAG
Seq C2 exon
GTCAGGCTTTTGCTCAAAAAAATAATGAAGTCACCTTTGTTAAAAAGAAGACCTGTGCTAATGTTGAGCTAAGCCCAGGAATGCAATATTTGATCATGGGAAAAGAAGCCTTAAAGATAAACATTGGTTACAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=FE(25.5=100)
A:
NA
C2:
PF0175916=NTR=FE(41.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTGAACATCTTATCTCGCAGT
R:
CTGTAACCAATGTTTATCTTTAAGGC
Band lengths:
214-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]