BtaINT0029632 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010520 | C8G
Description
Bos taurus complement component 8, gamma polypeptide (C8G), mRNA. [Source:RefSeq mRNA;Acc:NM_001110076]
Coordinates
chr11:106285178-106285756:-
Coord C1 exon
chr11:106285305-106285756
Coord A exon
chr11:106285217-106285304
Coord C2 exon
chr11:106285178-106285216
Length
88 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ACCCCTGGCCCGGCCCCCAGGTT
3' ss Score
8.53
Exon sequences
Seq C1 exon
CCCGGGGCGCCCGCGGGCCGGTGGACGTGGTCGTCGGGGACACGGACTACCGCGGCTTTGCCGTCTTGTACCTGGAGAGGGCGCGGCAGCTGTCGGTGAAGCTGTACGGTACGTCCTGGGGCCCTGGGGCCCGGGTCTGCTGCGCCCGCAGGGCTGTTGGGTGGGCTGGGTGGGCCCTCTCCTCCCTCCCGCCTGCCCCTGCTCTTCAGCCCAAATGTGGGGACAGAACGGGACGGGGAAGCGGGGCAGCAGGGGTCAGATCGCAGCCCGAGGCACACAGCCCAGCCCCCAGAGCGCCCTGCAGGCCCCTGCCCCGTGGGTGCCCAGGAGCCCGTGTGTCCTGCACGCAGTCCGCTCGCTCCCTGTGAGCGATTCCTTCCTGAGTGTGTTTGAGCAGCGGGTCCAGGGGGCCAACCTGACCGAGGACCACACCCTGTTCTTCCCCAAGTACG
Seq A exon
GTGAGTGTCATCCCCTGCCCCTGTCTCCCCCTGGCTCGCCGCCCACCCCCCACCTCCGGCTGCCCCTGACCCCTGGCCCGGCCCCCAG
Seq C2 exon
GTTTCTGCGAGGCCGCGGACCAGTTCCACACCCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010520:ENSBTAT00000056838:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(36.1=31.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCCGTGTGTCCTG
R:
CAGGGTGTGGAACTGGTC
Band lengths:
162-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development