MmuINT0027153 @ mm9
Intron Retention
Gene
ENSMUSG00000015083 | C8g
Description
complement component 8, gamma polypeptide [Source:MGI Symbol;Acc:MGI:88237]
Coordinates
chr2:25354425-25354635:-
Coord C1 exon
chr2:25354534-25354635
Coord A exon
chr2:25354464-25354533
Coord C2 exon
chr2:25354425-25354463
Length
70 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACTACTGCCTGGGCCCCTAGGTT
3' ss Score
7.83
Exon sequences
Seq C1 exon
TCCGCTCACTGCCAGTGAATGACTCTGTCCTGGATGTGTTTGAGCGGCGAGTCAGGGAAGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCCCAAGTATG
Seq A exon
GTGAGTGTCCCCAGCCCGTGACCCTCCTGGGTGACGCCCGACCCCCTCTTACTACTGCCTGGGCCCCTAG
Seq C2 exon
GTTTCTGCGAGACTGCGGACCAATTACACATCCTGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015083-C8g:NM_027062:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(24.5=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTGAATGACTCTGTCC
R:
CAGGATGTGTAATTGGTCCGCA
Band lengths:
128-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: