BtaINT0030527 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40306177-40309556:+
Coord C1 exon
chr19:40306177-40306328
Coord A exon
chr19:40306329-40309460
Coord C2 exon
chr19:40309461-40309556
Length
3132 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTTTTCCCCTTACCAAACAGGTT
3' ss Score
10.38
Exon sequences
Seq C1 exon
CTGAGGTTCAGAGCGAGATCGAGCGGATCTTTGAGCTAGCCCGAACCCTTCAGTTGGTTGCTCTGGACGCCGACACCATCAACCATCCAGCCCAGCTCTCCAAGACCTCACTGGCCCCCATCATTGTTTACATCAAGATCACCTCTCCTAAG
Seq A exon
GTGGGTACAAGACCCTACTGGGGACAGGAGTGCTCTGGGTGGGCTGCCTGTGTTTAAGCCCCAGGTACTGCTTACTAATCATGTGACTTCATCTCCTCAAGCCCAGATTCTCTTCTCCATCAAACTCCATTGTCTGGATATTGTGAAGATGCAACCTAATGTGAATACTTATCACTTAGCAAACGATCTGGTATAATATACCTCATGGTGTATTAAGTGTTTTAAATATTATTATTAGAGTTGTGCAGGTTAGTCCCCTGTCTCTGCTTTGTTGACCTCCCATCCTTAGTCCAGAAAATAGAAACAGTTCTGTGTGTTCTGCCTCAGTGTCACCCAGCTAACTTGGCAGTTGGAAAAAGACCTCTCCTGTCTTTTTTTTTTTCTCCTGTCTTTTTATTTCAGCCCTTTTTACTGTACTGCCCTCATTTAGACCTTGATAGAGATGAACTTGGTAGGAAGACTGATTTACTTCTTTGTCATACAGCAGCTCCTTTAATTCCCCCCACTAGACATTAGTGGTTTTGAGAAACGTGGAAGGTGAGCCAGGTTGAAGGATTTTTATAAAATGTTTATTTATTTGACTGCTCCGGATCTTAGTTGTGACACGTTGGGTCTTTAGTTGTGTCTTGTGGGATTTTTAGCTGCAGCAAACTCTTGGTTGTAGCAATTGGGATCTAGTTCCCTGACCAGGGATCGAACCCAGGCCCCTTGCGTTGGGAGTGCAGAATCTTAGCCAGTAGATCACAGTGGAAGTCCCTAGGTGAAGGATTTGAAGCATGAGGGTCAGATCCTAGCTCTGAGTGGCTTATTTTAATTAATTAAAGTTTGTTGTTTTTTTTGGTTGTATGTTATTGAGCTTTGGATCTTGGGGAGATAATTTAGCTTTTGCACAATTTCTTCACCTACAAAATGGGAATTATAATCCTTATCTTGAGGTAGTGATGTAAAGAGCCCAGAGTTCTGTCTGATGAAGGCAATCAGGGATTAACATTGCATGATAGCACCCTATGAGCTAAACACCCAGTTTCTAATGAGGATAAAGGGGAGGATGGGATTTAAGTACTTCCTGAGGTGGTTTAAAGGAGCAAATGAGATAATGGATGCAAAAGCACTTTGTGAACTAGAAAGTAACACACACTTCCATTGCCCTCGCTGAGCACTGACTCTGAGGTTAAGGGTGGGGACTCTGAAGCCGGGCTGCCTGGGTTTATGTCTCACTGCTGCCACTTACCTACTGGCTCTGGCTCTTTGGGCAGGTCACCTGACTTCTCTGTGCCTCAGTTTCCTCATTTGGAAAATAGGAATCCTTAGGTGATGTTTGTGAAGATTAAATAAACAAATTAACCATGCAAAGTGCCTGGTACCTATTGAGTGCTATATGTGTTCAATTCTTAAAGACTTTTATTTTGAAGTAATTTCAGATTTATAGGAGAGTTGCAAGAACAGTACAAAGGATCACCTTTGAATACCCTTCACTCAGACTCACTACTTTTTTAATGGCTCTTTAGAAATAAAATTCACATGCCATTTAATTCAGCCATTTAAAGCATACAATTTAATTTTTTTTTCAGACTCACTAATTTTGAACATTTTGCCACATCTACTTTATCTTTAGGGCTTCCCCCATGGCTCAGCAGGTAAAGAACCTGCCTGCAGATGCAGGAAATGAAAGAGATGTGGGTTTGATCCCTGGGTCAGGAAATGAAAGGATCCATGGAGGAGGGCATGGCAACCCACTCCAGTATCCTTGCCTGGAGAATTCCCATGGACAGAGGAGCCTGGGGGGGCTATAGTCCATAGCGTCACACAGAGTTGGACATGACTGAAGTGACTTGGCATGCACACACTTTATGTACGTCTATATTATGTATATATGTGTTTATATATATATATCTTTTTTCTTGAACTGTTTAAGTTGTAGATCTTGTATTTCTTTATCCCTCAAAATTTCAACATGTATTTCTTAAGAACAAGGACCTTAACTTACATGTCAAATTCAAGAAATCTCACTAAAATACTGTCTATTTTCAGTTTTCACCAGTTGTCCCAAAAATGCCCCTTATAGCAATTTCCCCTTCAATCCAGGATCACGTGTTGCATTTAGTTGTTAAATCTCTTTAGTATTTTTTTCTTCTTTATTTTTTTTCTCCTTAGTAATCTTTAAGCTAAAAATCGAAGAAGGGCTTTTCTTCGATTCTCATGAGACTATCATTTTTGAAGAGTACAGATCACTTATTTTGTAGATTGTTGCTCAAGGTGGGTTTGTCTGATGTTTCCCTGTCAACAGATTGAGGTTTTGCATTTCCGGTAGGAATATTCCCCAAGTGATGTGTCCTTCTGAATGCATTACATCAGGAAGCATAGGATGTTGGTTTGTTGTATTGCTGGTACTGTTAACTTTGACCACTTAGTTAAGGTTGTAGCTTTATGTCTAGCTATTATCATTATTATTGTTATCATTGAGAGGAGGATTATAATAGTGGCTGCCTAAAGGCATTATTGTCAGGACTAAATGAAAAGAAGGACTTTCCTGGTGGCACAGTGCTAAAGCATCTGGCTGGCAATGTGCAAGTCATGGGTTTGTCTCCTAGGTAGGGAGGATCCCCGGAGAAGGGAATGGCAACCCACTCCAGTAGTCTTGCCTGGAAAATCCATGGACAGAGGAGCTTGGTGGGCTACAAGTCCATGGGGTCGCAGAAGAGTCGGACACAACTTATCAACTAAACAACAACAACAAAATGAAAAAAAGCACAGACCAGTGCCAAGGCATAGCAAGTGTCCCTATCAAGGATGGCTGCCTGTTGTTAACACGGAGGGGAAGTTGGCTCAGAATGAATGAAACCTGTAAAGAAGGTTACAGGGGTTGGGAAGGAGAATCACTGCCCTTCATACAACCACTGTTGGAATGTCCCAGGGGAGGCTGGCATGAGACCCAGGAGAGAGCCTGAGCTTTGTGTAGGATGGACACAGGGCTGGTGAGGTCATTTCTGAAAAGGCATCCAGGGCTGAGCGTCATGGAATGTTCCCCCGGCCCTGATACTGTCTCTCCACGTTGGCTCCAACCAGGACCTGCCTCTCCAGGTTGGTGCATTGCAGGGTCCCTCTAGCTCCTCTTTTCCCCTTACCAAACAG
Seq C2 exon
GTTCTTCAGAGGCTCATCAAGTCTCGAGGGAAGTCTCAGTCCAAACACCTCAACGTCCAAATAGCGGCCTCAGAGAAACTGGCGCAGTGTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036:ENSBTAT00000002640:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]