BtaINT0031263 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17816805-17817320:+
Coord C1 exon
chr23:17816805-17816816
Coord A exon
chr23:17816817-17817108
Coord C2 exon
chr23:17817109-17817320
Length
292 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
CACCTGCAGGGCACATACAGTTT
3' ss Score
-4.11
Exon sequences
Seq C1 exon
ATCCCAAAGGAG
Seq A exon
GTACCGAAGATGAGGGGCTTGACGTCCGGCAGACACCCACCCCATTCCCGGCTGCGTGCAGATGGGCCAGGGGTGGAATTCGGTGAAGGGTCTGGGGGCCACTGGGTCAGGGTTCCAGCCCCCTTGGGCCCTGGGTGGGAGTCAGGGAAGGAAACCACTTCCTTCCCTGGAGGGAAGCTACCTGCCAGCCACAGCATCCCCCTAACCTTGCCCAGCTGGGCCTCACTGTGGGGGTCCCTCTCTCCCTGCCCTCTCCCCGAGGACCCTGGACCCACCTGCAGGGCACATACAG
Seq C2 exon
TTTCAGAACCTCCAGGATGTCCACTTGAAAAAGGACTTCTTCGTCAAGTACCAAGACCTGGGTTTCTCGGAGATTTTCACCAACTCGCGGGAGGTGAGCAGCCAGTTCCAGCTGCCCCCAGGGGAATACATCATCATCCCCTCCACCTTCGAGCCGCACAAGGACGCCGACTTCCTGCTGCGGGTCTTCACAGAGAAGCACAGCGAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(1.9=100)
A:
NA
C2:
PF0106717=Calpain_III=FE(44.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]