BtaINT0031276 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17810254-17810741:+
Coord C1 exon
chr23:17810254-17810387
Coord A exon
chr23:17810388-17810587
Coord C2 exon
chr23:17810588-17810741
Length
200 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGCCTTATCTGTGCCCGCAGGCT
3' ss Score
10.93
Exon sequences
Seq C1 exon
ATCTGGCAGTTTGGGGAGTGGATGGACGTTGTGGTGGATGACCGGCTGCCCACAAAGAATGGCAAGCTGGTGTTTGTGCACTCAGCGGAGCGCACTGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATATGCCAA
Seq A exon
GTGAGTACCTAGCCAAGGGACTGGCCTGGCCTCCAAGCCTGCCCTGACCGTTGGCAGTGACGGAAGCATCTGGAATCAGGGGAAGAGGCAGGGGGACCGCGGGGCATCCCTCACTTCCCTCCCCGCCCCGTCTGAGGTCCAAGCTTACAACCAGCCGCCTCCCAGACAGAGCCCAGACAGTGCCTTATCTGTGCCCGCAG
Seq C2 exon
GCTGAACGGATCGTATGAAGCTCTGTCGGGGGGCAACACGGTGGAGGGCTTTGAGGACTTCACAGGGGGCGTGACGCAGAGCTTCCAACTCCAGAATCCCCCTAGGAACCTGCAGAGGATTCTTAGGAAGGCCGTGGAGCGATCTTCCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.6=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCAGTTTGGGGAGTGG
R:
AGGGAAGATCGCTCCACGG
Band lengths:
284-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]