BtaINT0031403 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005034 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr15:57302514-57303709:+
Coord C1 exon
chr15:57302514-57302706
Coord A exon
chr15:57302707-57303515
Coord C2 exon
chr15:57303516-57303709
Length
809 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGAGCATCTGTGTCCCACAGGCA
3' ss Score
8.28
Exon sequences
Seq C1 exon
GCTGGCGGGCTGTTACCAGGCCCTGGATGGAGGCAACACGGCGGATGCGTTGGTGGACTTCACAGGTGGGGTTTCTGAGCCCATCGACTTGACCGAGGGTGACTTTGCCAACGACGAGGCCAAGAGGAACCAGCTCTTTGAGCGTGTGCTGAAAGTGCACAGCCGGGGAGGCCTCATCAGTGCCTCCATCAAG
Seq A exon
GTGAGCGCAGAGACAACAAGCCCCAGAGGCTACCCCCACAACCCTTCATTGACCTGACTGGGGTGGGGGGTGACTGTGGCTTCCTAGGCAGATCCCCTACACAGGCTGGCTCATAAATCAGACCCTTGGCCTCATGGGAGGAGGGGAGCAGTTAGAGGGTGCAGCCTTTCCCCAGGGCTGGACAGCACAAGCCTTAGGCCCCCTGCCCTAAGGCCTTGCCCACACTGTTCAACCAGCACCCCCATTCTGGCCCTCTCCTGTTGGAGAGATGGGTGTCTGTATATTCGAGAGTCATCAGCCAAGCTTTGAAAAATCAAGCCATGAGGCAGCTGGAAGAGGGGAGGGAGCCCCTTCTGCCTGCTGGCACAGGCCGAGGAGCTGCAAGAGAATCGTCTTATTTCACTGACTGCTCATGTTTTGGGTGGGAAAGCGGGGATTCAAGCAGAATTTGAACCCATGTTTGACTGACCAAGTGGTGTTTTGATAAAACGATTATCTGGAAAATTAAAAAGCCCTGATTGTCTGACTTCTGTGGTGTAAATACTCCCACCATGGTTGATGTCGAGCTACTGTTTTAACAGCCAGGTTGCAGAATTTCATCAGTGTTAGTGGACTCCAGCACAGCTGTGGGCTGACCCCACTGCAGGTCCCAGGCTTTGTAAAGGGCTGTGAATGCCAGGTCAGTCCCTAACCGCAGAGGAAGGAGGTCGTCGGGGCTGCCATTCCCGCCCCGTCCTATAGGGGGCGGTGTGCCCCCTGCTCCCGCTGGAGCCCGACAGGCCCCGCCTCTGAGCATCTGTGTCCCACAG
Seq C2 exon
GCAGTGACAGCCGCAGACATGGAGGCCCGGCTGGCGTGTGGCCTGGTGAAGGGCCACGCGTACGCCATCACGGATGTGCGCAAGGTGCGCCTGGGCCACGGCCTGCTGGCCTTCTTCAAGTCGGAGAAGCTGGACATGATCCGCCTGCGCAACCCCTGGGGCGAGCGGGAGTGGAACGGGCCCTGGAGCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005034:ENSBTAT00000006638:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.1=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGGAGGCAACACGG
R:
CAGGGCCCGTTCCACTCC
Band lengths:
356-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development