GgaINT0110203 @ galGal4
Intron Retention
Gene
ENSGALG00000000750 | CAPN5
Description
calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
Coordinates
chr1:192465788-192466801:-
Coord C1 exon
chr1:192466609-192466801
Coord A exon
chr1:192465982-192466608
Coord C2 exon
chr1:192465788-192465981
Length
627 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CCTTGTGTCCTCCTGCCCAGGCT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTTGTCAGGATGTTACGAGGCCCTGGATGGAGGCAACACAGCTGATGCTCTGGTAGACTTTACTGGTGGGGTCTCTGAACCTATCGACCTGACTGAAGGGGACTACACCACTGATGAAGCCAAACGAAACCTCCTCTTTGAGCGTGTGTTGAAAGTGCACAACCGTGGAGGCCTCATCAGCTGCTCCATCAAA
Seq A exon
GTAAGTAGCGTTGCCTGCATGATCATGGTTTTATGGGAATAGGCATTTTAGGATGCTGTTTATCCTAGCCTGTTGGAGGCATCTAAATTAGATCAAGTAAACTGTGACCAAGGGTTTGTATATTTTCATATAGATGTCAAAGGAACTTGCACAGGGATGTAGTTTAGTGGGCAAGGTGGTGATGGGTTGATGGTTTGACTAGATGATCGTAAAGGTCTTTTCCAACCTTAATGATTCTATGATTCTATGAACTCAAGCCCAGATCCAACAGTTTTTATTACCCATTTCTATGTCCAAAGGCACAAATTCATCCTACTGGCCTTTAAATGCTATCAGAGCATTCACTTCAAGGAAAAAAAAACAACAAAAAAAAAAACATTTTCATGTCTGTATGTGAACATCTTCATGAACACTGGGTTTCAGGTCTTCGATTATAACCAATAGGATGAGCATTGTTGCTTAAAGAAGATTATGGGACATCAGGGGAGCCCAGAGACCTCATGTAACTGGTGAAGACTAGAATGAATCTAGTACCTAACACAATGTCAGATACTCCTGATGAGGCAGCTTGGCAACTTCCTCTGTCCCTGAGCACTGGTGCTCTTCCCCTTGTGTCCTCCTGCCCAG
Seq C2 exon
GCTATGTCAGCAGCAGACATGGAGGCCCGCCTGGCCTGTGGGCTGGTGAAGGGCCATGCGTACGCTGTGACTGATGTGCGGAAGGTCCGCCTGGGCCACGGCCTGCTGTCTTTCTTCAAGTCAGAGAAGCTGGACATGATCCGCATGCGCAACCCATGGGGTGAACGAGAGTGGAACGGCCCTTGGAGTGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000750:ENSGALT00000001093:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGCAACACAGCTGATG
R:
TTCCACTCTCGTTCACCCCAT
Band lengths:
343-970
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]